Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq35 179 6e-41 seq126 111 2e-20 seq335 93.3 7e-15 >seq35 Length=1646323 Score = 179 bits (198), Expect = 6e-41 Identities = 200/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| |||||||||| | | || ||||| || ||||| || || || || ||||| Sbjct 397745 GCTAAACGTCATCGCAAAGTGTTACGTGATAATATTCAAGGCATAACAAAACCGGCTATT 397686 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||| ||||||||||||| || || || ||| ||||||| ||| | |||||||| | | Sbjct 397685 AGGCGTTTGGCTCGTCGTGGCGGTGTGAAACGTATCTCTGGTTTGATTTATGAAGAAACT 397626 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | || | | | ||||||| ||||||| || ||||| ||| Sbjct 397625 CGAGGTGTATTGAAAGTGTTTTTAGAAAATGTTATCCGTGATGCTGTCACATATACTGAG 397566 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||||||||| || || || || | |||||| |||| ||||||||||| | ||||| Sbjct 397565 CACGCTAAACGAAAAACAGTTACAGCAATGGATGTCGTTTATGCATTGAAGAGACAAGGT 397506 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | ||||||||||||| ||||| Sbjct 397505 CGCACTCTTTATGGTTTTGGCGGTTAA 397479 >seq126 Length=636627 Score = 111 bits (122), Expect = 2e-20 Identities = 160/228 (70%), Gaps = 12/228 (5%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| |||||||| | | | || ||||| || ||||| || || || || ||||| Sbjct 10098 GCTAAACGTCATCGAAAAGTGTTACGTGATAATATTCAAGGCATAACAAAACCGGCTATT 10039 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||| |||||||||||| || || || ||| ||||||| ||| | |||||||| | | Sbjct 10038 AGGCGTTTGGCTCGTCGTGACGGTGTGAAACGTATCTCTGGTTTGATTTATGAAGAAACT 9979 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | || | | | ||||||| ||||| | ||| Sbjct 9978 CGAGGTGTCTTGAAAGTATTTTTAGAAAATGTTATCCGTGATGAT------------GAG 9931 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTG 16660 ||||||||||| || || || || | ||| || |||| ||||||||| Sbjct 9930 CACGCTAAACGAAAAACAGTTACAGCAATGTATGTCGTTTATGCATTG 9883 >seq335 Length=193685 Score = 93.3 bits (102), Expect = 7e-15 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 16583 GTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATG 16642 ||||| | |||||| | ||||| ||||| ||||||||||| ||||| ||| | ||| Sbjct 170055 GTTATTCGTGATGCCGTAACTTATACTGAGCATGCTAAACGTAAAACTGTTACCGCTATG 169996 Query 16643 GATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||| | || |||||||||||||||||||| || | | || |||||||| |||| Sbjct 169995 GATGTAGTTTATGCATTGAAACGTCAAGGACGCACTTTATACGGTTTTGGCGGTTA 169940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073690479143