Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq1118 123 5e-24 seq13 109 1e-19 >seq1118 Length=6124 Score = 123 bits (136), Expect = 5e-24 Identities = 288/430 (67%), Gaps = 7/430 (2%) Strand=Plus/Minus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||||||||| || ||||| |||| ||||||||||||||| || | || | Sbjct 1367 ACATGATCATTGTATATATGTTTCACATTCATTTCATCTTGTTTAAATATTACTATCTTA 1308 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 ||||||||||| | || | || ||||| ||| ||||| |||||||| | ||| ||| Sbjct 1307 TTTGCATTATCACGTATTAAATGTTTGGGAATTTTCGTATATGTTTGACATAAATAAAAG 1248 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 | |||| | ||| |||| |||||| || || || | || || ||||| ||| Sbjct 1247 CAATCAATGTGCTTATGTCTACCCATACAAAAGTAATTCCTTATAGTATTTTGTTTGTCA 1188 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTT---CAGGCTTGATT 7521 || ||||| || |||||||| | || | || || || ||| | ||| || Sbjct 1187 CATATTACATCATCGAATATCATTATTGAATGCGGTTTTGC--CTTAGATACACTT-ATA 1131 Query 7522 ACAGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTC 7581 || ||||| ||| |||||| || || ||||| | ||| | | | ||||| | Sbjct 1130 ACTTTTTCATTTTCTGAGAATGTAAATAAGTTTATACCCTTTATCGGATCGATCAGTGAC 1071 Query 7582 TCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAAC 7641 | ||| | |||| |||||||| | | ||| || || || | || || || | ||| Sbjct 1070 TGCAGATAACGATATTTTGGTTGATATAAAGATTTCGAATATATGTAGATGTTTTTAAAA 1011 Query 7642 CTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGA- 7700 || | |||||| ||| | | || ||| | || | |||| ||||| ||||| ||||| Sbjct 1010 CTGAGACCGTTAGGACTTTCTATTAGACTAATCATAACATTTGTCTTGCCACAATTTGAC 951 Query 7701 TGGCCCGCAA 7710 ||||| ||| Sbjct 950 GGGCCCACAA 941 >seq13 Length=3303135 Score = 109 bits (120), Expect = 1e-19 Identities = 281/425 (66%), Gaps = 6/425 (1%) Strand=Plus/Plus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||||||||| || ||||| |||| ||||||||||||||| || | || | | Sbjct 3287951 ACATGATCATTGTATATATGTTTCACATTCATTTCATCTTGTTTAAATATTACTATCATA 3288010 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 ||||||||||| | || | |||||||| |||| ||||| |||||||| ||| ||| Sbjct 3288011 TTTGCATTATCACGTATTAAATGCTTGGGAATTCTCGTATATGTTTGACATGAATAAAAG 3288070 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 | |||| | | |||| |||||| || || || | || || ||||| ||| Sbjct 3288071 CAATCAATGTTTTAATGTCTACCCATACAAAAGTAATTCCTTATAGTATTTTGTTTGTCA 3288130 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTT---CAGGCTTGATT 7521 || |||| || |||||||| | || | || || || ||| | ||| || Sbjct 3288131 CATATTACATTATCGAATATCATTATTGAATGTGGTTTTGC--CTTAGATACACTT-ATA 3288187 Query 7522 ACAGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTC 7581 || ||||| ||| |||||| || || |||| | ||| | | | || |||| Sbjct 3288188 ACTTTTTCATTTTCTGAGAATGTAAATAAGTTTATACACTTTATCGGATCGATCATTGTC 3288247 Query 7582 TCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAAC 7641 | ||| | |||| |||||||| | | ||| || || || | || || | | ||| Sbjct 3288248 TGCAGATAACGATATTTTGGTTGATATAAAGATTTCGAATATATGTAGATGTCTTTAAAA 3288307 Query 7642 CTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGAT 7701 || | | |||| ||| | | || ||| | || | |||| ||||| ||||| ||||| Sbjct 3288308 CTGAGATCGTTAGGACTTTCTATTAGACTAATCAAAACATTTGTCTTGCCACAATTTGAC 3288367 Query 7702 GGCCC 7706 ||||| Sbjct 3288368 GGCCC 3288372 Score = 84.2 bits (92), Expect = 4e-12 Identities = 284/437 (65%), Gaps = 9/437 (2%) Strand=Plus/Plus Query 5217 GGTTTCATTTTGATGGTACTGTGTATGGTGCTGTTGTAAGTATTCACCAAGTCATCAAGT 5276 ||| ||||||| || || || || | ||| | ||||| ||| | | || | | | Sbjct 3285113 GGTGTCATTTTTATCGTTCTATGAAATGTGTTATTGTAGTTATCGATAAGCTCCTTATAT 3285172 Query 5277 GTATCGGCCCACTTGTAGCTGCCGCGATTTGTAAACTCTCGCCACATT-TTCGTCTTAAG 5335 ||| ||| |||||| | || || |||||||| |||||| ||| | |||| Sbjct 3285173 ATATGAATCCATTTGTAGGTTCCTTGAAAACTAAACTCTTTCCACATCATTCCTTTTAA- 3285231 Query 5336 TGTTCTATTGAAACGTTCACATATGGATGCTTTGAGATTGCTGAATGTTGAATACAGATT 5395 ||||||||| || ||||| |||||| || || ||| ||| |||||||||| |||| Sbjct 3285232 TGTTCTATTAAATCGTTCTACTATGGACGCCTTCAGAACGCTATATGTTGAATAGTGATT 3285291 Query 5396 TATCTTGTGCTGCTT--CATCAGATCTTTGAATTCTTTGTTGTAAAACTCTTTACCCTGA 5453 || | | ||||| ||||| | | |||| || ||| |||||||||||| | | Sbjct 3285292 AATATGAT--TGCTTTGCATCAATTGATGAAATTGATTATTGAAAAACTCTTTACTATCA 3285349 Query 5454 TCAACATGGAGATTCTTAGG---GATACGACCTTGCTGAAGTACAGACTTCATAGCACTT 5510 || || | ||| || || | | ||| || || || | |||||||||| | Sbjct 3285350 TCGGTTTGTAAATTTTTCGGTTTGCGATGACTTTTCTCAAAAATTCCCTTCATAGCATTC 3285409 Query 5511 GTGACATCTACACCACTTTTAGACTTAATTGGAACTGCCCAGGCATATTTTGAAAATATA 5570 || || | | | || |||| || | | | ||||| || ||| |||||| | Sbjct 3285410 GTTACGTTTTGAGCAGTTTTGTTTTTCACCGCCATAGCCCAAGCCATTTTCGAAAATGTG 3285469 Query 5571 TCTATGATTGTAAGCAGATACTTGTATCCTTTATTGACTGTTGCATATGGAATCATCTCA 5630 ||||| | ||| | || || || || ||||| | |||||| ||||| ||| Sbjct 3285470 TCTATTACTGTTAAAAGGTAACGATAACCGTTATTTTGCGATGCATAGCTTATCATTTCA 3285529 Query 5631 ACCAAGTCAGCTTGCCA 5647 |||| || |||||||| Sbjct 3285530 ACCAGATCTGCTTGCCA 3285546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97972479150654