Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq439 280 4e-71 >seq439 Length=76666 Score = 280 bits (310), Expect = 4e-71 Identities = 552/811 (68%), Gaps = 8/811 (1%) Strand=Plus/Minus Query 482 CGTTATCGTGGTGCTCACGGTGGACGTGGATCTGCTAAGACGCGTACTTTTGCACTAATG 541 |||||||| |||| ||||||| ||||| ||| || ||||| || ||||| |||||| Sbjct 9317 CGTTATCGCTGTGCATACGGTGGGCGTGGCAGTGCAAAAACGCGCACCTTTGCGCTAATG 9258 Query 542 ACTGCCGTCAAAGCGTATCAAGCGGCAGAAGCCAATATCAGT--GGAGTTATCCTGTGCG 599 | || || || || ||||| || ||| | || | ||| || || || || |||| Sbjct 9257 ATGGCGGTTAAGGCTTATCAGGCAGCAAGAAACAGTG--AGTCAGGCGTCATACTTTGCG 9200 Query 600 CTCGAGAATACATGAACTCGCTGGAAGAATCCTCCATGGAGGAGGTAAAGCAGGCAATTC 659 || || | ||||||||||||||||| || ||| |||| || || | |||||| | Sbjct 9199 TGCGTGAGTTTATGAACTCGCTGGAAGAGTCGAGTATGCAGGAAGTGAAACTGGCAATAC 9140 Query 660 GCTCCGTGGCGTGGCTTGACGATTACTTCGACATTGGAGAGAAATACATCAGGACAAAGA 719 || ||| | ||||| | | | |||| || || || || |||||||| | || Sbjct 9139 AGTCAGTGCCATGGCTGGCGGCTCACTTTGATATCGGTGAAAAATACATTCGCACCCTCG 9080 Query 720 ACCGCAAGGTCAGCTATGTATTCTGCGGTCTTCGCCATAACCTAGACAGCATCAAATCAA 779 || | || |||||||| ||| | || ||||| ||||| || ||||| |||||||| | Sbjct 9079 ACAGGCGAGTGAGCTATGTGTTCAGTGGACTTCGGCATAATCTTGACAGTATCAAATCGA 9020 Query 780 AAGCGCGAATTCTTGTAGCCTGGGTTGACGAGGCCGAGTCTGTTTCTTCGACTGCGTGGA 839 |||| || ||||| | |||||| || ||||| || | ||| | || ||| Sbjct 9019 AAGCACGTATTCTGCTGTGCTGGGTGGATGAGGCTGAAACCGTTAGCGAAATAGCCTGGC 8960 Query 840 AAAAGCTTCGCCCGACCGTTCGTGAAGAAGGCTCAGAAATCTGGGTTACGTGGAACCCGG 899 | || || || ||||| || || ||||| ||| | ||||| || |||||||| | Sbjct 8959 AGAAACTCGATCCCACCGTACGAGAGCCTGGCTCTGAAGTATGGGTAACATGGAACCCTG 8900 Query 900 AGAAGGACGGCAGCGCCACCGACAAACTTTTCAGAAAGAATCCCCCAAAAAGCTCA--AT 957 ||| || || ||||| ||||| || | || | ||| || | | || || || Sbjct 8899 AGACAGAGGGTAGCGCGACCGATAAGCGATTTCGCAAGGAT-AGTGATGACGC-CATTAT 8842 Query 958 GATTGTCGAGATGAACTATGTCGACAATCCATGGTTCCCTGCGGTGCTTGAGGAAGAGCG 1017 || || |||||||| | || ||||||||||| | ||||||||| ||| | | Sbjct 8841 CGCGGTTGAAATGAACTACATGGATAATCCATGGTTTCACAGTGTGCTTGAGCAAGTGAG 8782 Query 1018 ACAGGAAGACCTGGCAAACCTTGATTACGCAGATTACGCGTGGATATGGGAAGGCGCATA 1077 ||| ||||| | ||||| | ||| || || ||||| ||||||||||| || Sbjct 8781 GCAGCGGGACCTCCGTATGCTTGACTCGGCAACCTATGCCTGGATTTGGGAAGGCGCGTA 8722 Query 1078 TCTCGAAAACTCAGATAAGCAGGTGCTGGCTAACAAATACGTCGTGCAGAGCTTCGAAGA 1137 ||| |||||| | |||||||||| || | ||||| || | | | ||| || Sbjct 8721 TCTGGAAAACGCTAATAAGCAGGTCATGAGTGGGAAATATGTGTTTGAAACGTTCCCGGA 8662 Query 1138 CAATCTATGGAGAAAATCAGAGCGCTTGCTGTTCGGTGCTGACTTCGGATTCGCGAAAGA 1197 |||| |||| | | || || || | || ||||| || || || || ||| |||| Sbjct 8661 TGATCTGTGGAAGCAGGCCGATCGGCTGTTCTTTGGTGCCGATTTTGGCTTTGCGCAAGA 8602 Query 1198 CCCCAGCACACTCATTCGCATGTTCATTCTGGATAACAACCTCTACATCGAATACGAGGC 1257 || | || || || ||||||||||| ||||||||| |||||||| ||||||||||| Sbjct 8601 TCCGAATACGCTAATACGCATGTTCATACTGGATAACCGACTCTACATTGAATACGAGGC 8542 Query 1258 CTACGGCAATGGAGTAGAACTCGACGATATG 1288 ||||| ||| || ||||| || || ||| Sbjct 8541 TTACGGTGTTGGCGTTGAACTGGATGAAATG 8511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149955459971844