Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq184 210 2e-49 >seq184 Length=525875 Score = 210 bits (232), Expect = 2e-49 Identities = 469/708 (66%), Gaps = 4/708 (1%) Strand=Plus/Minus Query 21291 CCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAAT 21350 ||| |||| ||| || | ||| |||||| ||||||| ||||||||||| |||| || Sbjct 28985 CCAATTCTAATAGCAAACGATCCGCTACATATTCTATGTATTGACACATACTTTCATTAT 28926 Query 21351 TCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGG 21410 |||||||||| || || || || ||||||| ||||| ||| ||||| || |||| Sbjct 28925 TCATACCGATTAAATTGACTGGTAGAGCTTCTGTCAGAAATTCCTTTTCAATTTTAACGG 28866 Query 21411 CTTCAACAATTATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACA 21470 | || ||||| | | ||| | | | | || | | || | |||||||| Sbjct 28865 CATCGGTTATTATTTCCAATATGCGTTCTTTGGTCGGTTTTTGTATCAAATATTTAAACA 28806 Query 21471 TCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATG 21530 | ||| ||||| || ||||| ||||||||||| | |||||||||||||||||||| Sbjct 28805 TTAAAACCGCAAATTCGCAATGTAAACCTTCATCGCGTGATATTAATTCATTAGAAAATG 28746 Query 21531 TTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAA 21590 ||| ||| ||||||| ||| | || || | ||||||||| || ||||| ||| || Sbjct 28745 TTAGACCCGGCATTATTCCACGTTTCTTAAGCCAAAATATCGAAGCAAAACTTCCACTAA 28686 Query 21591 AGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAG--ATTCTTT 21648 |||| || || || ||||||||||| || | | || ||||| | | | | Sbjct 28685 AGAATATACCTTCGACGGCAGCAAAAGCTATGACACGCTCACCAAAATTCGCCGAACGCG 28626 Query 21649 ATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAAT 21708 || ||||||| | ||||||| || || | ||||| | || || ||||| Sbjct 28625 AT--GATATCCAAGCTAAAGCCCATTCCGCTTTCTTTTTAACTAACGGCATCGTCTCAAT 28568 Query 21709 AGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACT 21768 || || ||||||| || ||| | ||| | || ||| Sbjct 28567 GGCATTAAAAAGATAATCGCGTTCTTTCGGATCTGCGATAAATGTTTCAATAAGTAAACT 28508 Query 21769 ATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTC 21828 ||||||||| || |||| |||||| || ||||| ||||| || ||||| || | || || Sbjct 28507 ATACATTTCCGAGTGTACATTTTCGATGGCTATTTGAAAACCATAAAAGCAACGAGCTTC 28448 Query 21829 TGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACT 21888 | |||||| || | |||| |||| | || || ||||| || || || ||| Sbjct 28447 GGTTACTTGAACTTCTTGAGAAAAACGTTCCACTAAATTCTCATTAACAATGCCGTCAGA 28388 Query 21889 GGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTT 21948 || |||||||| ||||| | || | ||||||| ||||| | ||| |||||| | Sbjct 28387 TGCCGCAAAAAAAGCCAAAACATGTGAAATAAAATGACGTTCATCATCAGTTAATCGCTC 28328 Query 21949 CCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 ||||| | |||| | | ||| || ||||| | |||||||| Sbjct 28327 CCAATGATCAAGATCTGCAGCGAGATCAACCTCTTCCGCCGTCCAAAA 28280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531889822897240