Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq146 95.1 1e-14 seq53 91.5 1e-13 >seq146 Length=585010 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 71678 GATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTCACGGATAC 71737 ||||| | |||||| | |||||| ||| | | ||||||||||| ||||| | Sbjct 532076 GATGATTTGTGGAATTCAGCTCAGTTACAATTGATAAGAGAGGGTAAAATGCACGGTTTT 532017 Query 71738 CTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCTC 71797 | |||||||| ||||| ||||||||||| || ||| || ||||||| || || |||| Sbjct 532016 TTGCGCATGTATTGGGCGAAAAAGATTCTGGAATGGTCTAAAACTCCTGA--AGACGCTT 531959 Query 71798 GAGTA--TTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAACGGTT 71855 || | ||| | | | |||| |||| |||||| | || || ||||||||||||| Sbjct 531958 TAGAAATTTCACTATTTTTAAATGATAAGTACAGTTTGGATGGAACGGATCCTAACGGTT 531899 Query 71856 ATGTCGGT 71863 | || ||| Sbjct 531898 ACGTGGGT 531891 >seq53 Length=1361919 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 ||||||||| | || ||||| ||||| ||||| ||| | ||||| | ||| | ||| || Sbjct 1232341 AAAATGCAAATCTTCGTAAAGACATTGACTGGCAAAACAATCACTTTAGAAGTGGAACCA 1232400 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 || || || || | || ||| |||||| ||||||||||| || ||||||||| Sbjct 1232401 TCTGATACAATTGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGTATTCCTCCCGAT 1232460 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG 26925 || || | | || | | ||||||||||| ||||||| Sbjct 1232461 CAGCAGCGTTTGATCTTTGCTGGCAAACAACTGGAAGATG 1232500 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||||||||| || ||||| ||||| || || | || ||||| || Sbjct 1241334 AATGCAAATCTTTGTAAAAACTTTGACTGGCAAATCCATTACTTTGGAGGTAGAACCATC 1241393 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || ||||| | || ||| ||| ||| || |||||||| || ||||| ||||| Sbjct 1241394 AGATACTATCGAAAACGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCA 1241453 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | | || | | ||||||||| | ||||| | | | | | || || || Sbjct 1241454 GCAGCGTTTGATCTTTGCTGGCAAACAATTAGAAGACGGTCGCACTCTTTCGGATTACAA 1241513 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || || |||||||| ||| | ||| |||| ||| | || | || |||| Sbjct 1241514 TATACAGAAAGAATCAACTTTGCATTTGGTGCTGCGTCTCCGCGGTGGAA 1241563 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| || || || ||| | ||||| | ||| | || | | Sbjct 1234236 ATGCAAATCTTCGTCAAAACTTTGACCGGTAAAACCATCACTTTGGAAGTCGAGCCTTCC 1234295 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| || | |||||| ||||| || || ||||| || || || || || Sbjct 1234296 GATACCATTGAAAACGTCAAAGCTAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCAG 1234355 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | || | || || |||||| | ||||||| | | || ||| |||||| Sbjct 1234356 CAGCGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTCTCTCCGATTATAAC 1234415 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTC 26978 |||||||| || |||||| ||||| ||||| Sbjct 1234416 ATTCAAAAGGAGTCTACTCTCCATTTGGTC 1234445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478652521604720