Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq148 196 1e-44 seq184 105 2e-17 seq1 100 7e-16 >seq148 Length=545759 Score = 196 bits (216), Expect = 1e-44 Identities = 581/882 (66%), Gaps = 22/882 (2%) Strand=Plus/Plus Query 363434 ATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATT 363493 ||||| | |||| || || ||||| |||||| |||||||||| || |||||||| || Sbjct 219884 ATGGTAAAATTGCGGAGCGGCCGCAACATATGCTAATGCGTGTCGCCATTGGTATTCACG 219943 Query 363494 GCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGC 363553 | || |||| || || |||||||||||||| ||| | | || || || | Sbjct 219944 GTGATGACATTGAGGCTGCTATTGAAACATATAATCTTATGTCGGAGCGCTATTTTACTC 220003 Query 363554 ACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTC 363613 | || |||||||| | | ||||| |||| |||||| |||| ||||| |||| Sbjct 220004 ATGCTACGCCAACTTTATTTGGTGCTGCAACTATACGTCCACAATTGTCATCTTG-TTTC 220062 Query 363614 TT-CTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGA--ATTGTG 363670 || |||| || || || ||| | | ||||| ||||| | || ||| | |||| Sbjct 220063 TTGCTAACGATCCCTGAAGACTCCTTGAAAGGTAT-TTTGA-AGGCTGTAGACCAATGTG 220120 Query 363671 CTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGA 363730 || ||||||||| || || || || ||| || || || || ||||| | Sbjct 220121 CTAAAATTTCCAAGTCAGCCGGGGGGATAGGTTTAA--ATGTTCATTG--CGTGCGAGCA 220176 Query 363731 ACAGTTACAT---TCGC-GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 | || || | || ||||| || | ||| |||| || ||||| ||| | ||| Sbjct 220177 AAAGGGACGAAGATAGCAGGCACTGGTGATGTATCGGATGGTCTTGTTCCTATGTTGCGT 220236 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 ||||| ||| | ||| | || || || |||||||| ||||| || ||| || ||| Sbjct 220237 CTGTTTAACAGTGTTGCCCGTTATGTAGATCAGGGTGGTGGAAAACGTCCAGGTGCTTTT 220296 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 |||||||| | |||||| || || ||| |||| || ||||| || | |||||| Sbjct 220297 GCTATGTACTTGGAGCCTTGGCACGCAGATGTTTTCGAATTTCTAGATTT---GAAAAAG 220353 Query 363907 A---CGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 | || | ||| || || ||||| ||| |||| ||||| || ||| | | || Sbjct 220354 AATTTTGGTGAGGAGAAAGATCGAGCACGCGATTTGTTTTATGCCCTATGGATACCGGAT 220413 Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGT 364023 | || ||||| | || |||| | | ||||||| || | || || || ||||| Sbjct 220414 CTGTTCATGAAAAGAGTAGAGGATGATGGCGATTGGTCTCTAATGTGTCCTCATAAATGT 220473 Query 364024 CCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCG 364083 || ||| | | || || ||||| || || | || ||||| || || ||| Sbjct 220474 CCTGGTTTGTGTGAAGTTTGGGGAGATGAATTTGACAAATTATACATGAAATACGAAAGT 220533 Query 364084 GAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATG-GATTC 364142 ||||| || || | | |||||| || | | |||||||| || ||| | || Sbjct 220534 GAGGGCAAAGCGAATCAAACAATTAAAGCTCGTGCCTTGTGGTTTGCAAT-ATGCAAGTC 220592 Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202 || ||||| ||||| || |||||| | ||||||||| | ||||| |||||| || Sbjct 220593 TCAAGCGGAGACTGGAACTCCTTATATGCTTTACAAAGATGCTTGCAATCGCAAGAGTAA 220652 Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACAC 364262 || ||| || ||||||| || | || ||| | ||||| || ||| | |||||||| Sbjct 220653 TCAACAGAACATTGGTACTATAAAATCTAGTAACTTGTGTACAGAAATTGTCGAATACAC 220712 Query 364263 CGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGC 364304 | | || || | ||| || || ||||| || ||||| || Sbjct 220713 TTCGGCTGATGAAATTGCAGTTTGCAACCTGGCCTCGATTGC 220754 >seq184 Length=525875 Score = 105 bits (116), Expect = 2e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 || ||| | || || ||||||| || ||||| || |||||| |||| ||| | | Sbjct 28646 GAGCGTGTCATAGCTTTTGCTGCCGTCGAAGGTATATTCTTTAGTGGAAGTTTTGCTTCG 28705 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || |||||||| || ||||||| ||| |||||||||||||| ||||| ||||| ||||| Sbjct 28706 ATATTTTGGCTTAAGAAACGTGGAATAATGCCGGGTCTAACATTTTCTAATGAATTAATA 28765 Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCG 22641 || ||||| ||| | ||| ||| |||||| Sbjct 28766 TCACGCGATGAAGGTTTACATTGCGAATTTGCG 28798 >seq1 Length=10097680 Score = 100 bits (110), Expect = 7e-16 Identities = 170/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 145551 CCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCGTCTGGATCATACACCGCAAGA 145610 || || || || || |||| |||||| | |||| | |||| ||||||| || || Sbjct 2053817 CCTGTGCCTATTTTACATATACTTTGATATTCTTCATTGTCTTGATCATAGCAAGCTAGC 2053876 Query 145611 AGGTATGCACCATATACACCAGTACGTTTTCCGCGACCGGTATACCCCGCAATTGGTACA 145670 ||||| ||||||| |||||||||||| || ||| |||| || ||||| || Sbjct 2053877 AGGTAACCACCATAGCTACCAGTACGTTTCCCTTTACCTCTATAGCCACCAATTACCACT 2053936 Query 145671 AGATCACAAC-TATCACC-CATTCCGGCAAGATAATCCTTTTTAAGTTTTAGCCAATTGA 145728 | ||| |||| |||||| ||| | | |||| || || ||||||||||| |||||||| Sbjct 2053937 AAATC-CAACGAATCACCACATCCTGACAAG-TAGTCTTTTTTAAGTTTAAGCCAATTAC 2053994 Query 145729 GAGAACGTTTCGATGGTTCATAGCTAGAGTTATCGTCCAATGATTTTACCATTAGCCCCT 145788 | || | | | | | |||||| ||| || | || || | ||| |||||||| |||| Sbjct 2053995 GTGATCTTCTTGCTATTTCATATGTAGCGTCAATTTCTAAAGTTTTCACCATTAGACCCT 2054054 Query 145789 C 145789 | Sbjct 2054055 C 2054055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303326029591082