Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq308 98.7 9e-16 seq53 98.7 9e-16 seq148 91.5 1e-13 >seq308 Length=190705 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 23986 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGG 24045 |||| ||||| | ||||||||||| | || || || | ||||| | || |||||| Sbjct 86853 ACAATATGCAGATTTTTGTAAAAACCCTTACGGGCAAGACCATTACTCTTGAGGTCGAGC 86794 Query 24046 CCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCG 24105 || || || || || | || ||| |||||| |||||||| || || || |||| Sbjct 86793 CCTCTGATACTATTGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCG 86734 Query 24106 ATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GAT 24164 | ||||| || |||| | || || || ||| | ||||||| | || | | | ||| Sbjct 86733 ACCAACAACGATTGATCTTCGCTGGAAAACAATTGGAAGATGGTCG-CACATTATCGGAT 86675 Query 24165 TATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| |||||||||||||| || | ||| | ||||| | ||| |||| || Sbjct 86674 TATAATATTCAAAAAGAATCCACGTTACATCTTGTGTTGCGTTTGCGAGGTGG 86622 >seq53 Length=1361919 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | || ||||| ||||| ||||| ||| | || || | ||||| || || Sbjct 1232341 AAAATGCAAATCTTCGTAAAGACATTGACTGGCAAAACAATCACTTTAGAAGTGGAA-CC 1232399 Query 24048 AAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | | || || || || | || ||| |||||| ||||||||||| || |||||||| Sbjct 1232400 ATCTGATACAATTGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGTATTCCTCCCGA 1232459 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||| | |||| | | ||||| ||||| ||||||| | | | ||||| Sbjct 1232460 TCAGCAGCGTTTGATCTTTGCTGGCAAACAACTGGAAGATGGGCGCACATTGTCTGATTA 1232519 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || ||||||||||| ||| | || || || Sbjct 1232520 CAATATACAAAAAGAATCAACATTGCACTTGGT 1232552 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| || || || ||| | || || | ||||||||| | | Sbjct 1234236 ATGCAAATCTTCGTCAAAACTTTGACCGGTAAAACCATCACTTTGGAAGTCGAGCCTTCC 1234295 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | |||||| ||||| || || ||||| || || || || || Sbjct 1234296 GATACCATTGAAAACGTCAAAGCTAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCAG 1234355 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | || || || ||| | ||||||| | | | || |||||||||| Sbjct 1234356 CAGCGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTCTCTCCGATTATAAC 1234415 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||||||| || ||||| | ||||| || ||| Sbjct 1234416 ATTCAAAAGGAGTCTACTCTCCATTTGGTCTTA 1234448 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| || ||||| ||| | ||||| | || || ||| | Sbjct 1241562 AATGCAAATCTTTGTTAAAACTTTGACTGGCAAAACTATTACTTTGGAGGTAGAGCCGTC 1241621 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || ||||| || ||| ||| || || || ||||| || |||||||||| Sbjct 1241622 GGATACTATCGAAACGGTTAAAGCAAAAATCCAAGATAAGGAAGGTATTTCTCCCGATCA 1241681 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| | |||| | | ||||| ||| | ||||| | | | | |||||| || Sbjct 1241682 ACAGCGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGGCGCACTCTGTCCGATTAAAA 1241741 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 || ||||||||||| ||| | |||||||| ||| Sbjct 1241742 TATCCAAAAAGAATCAACACTCCATTTAGTCTTA 1241775 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||||||||| || ||||| ||||| ||||| | || || || ||| Sbjct 1241334 AATGCAAATCTTTGTAAAAACTTTGACTGGCAAATCCATTACTTTGGAGGTAGA-ACCAT 1241392 Query 24050 C-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 | || || ||||| | || ||| ||| ||| || |||||||| || ||||| |||| Sbjct 1241393 CAGATACTATCGAAAACGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGATC 1241452 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 | ||| | |||| | | ||||| ||| | ||||| | | | | ||||| | Sbjct 1241453 AGCAGCGTTTGATCTTTGCTGGCAAACAATTAGAAGACGGTCGCACTCTTTCGGATTACA 1241512 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 | || || |||||||| || | ||||| ||| Sbjct 1241513 ATATACAGAAAGAATCAACTTTGCATTTGGTG 1241544 >seq148 Length=545759 Score = 91.5 bits (100), Expect = 1e-13 Identities = 197/287 (69%), Gaps = 11/287 (4%) Strand=Plus/Minus Query 132989 TTGCCCTGAGTCTCGTAACTTTC--GTATAATCGCTCAAATTCTTCGCCATAGCAGTCGT 133046 ||||||| | | ||||| |||| ||||||| |||||||| || || | || Sbjct 220541 TTGCCCTCACTTTCGTA--TTTCATGTATAATTTGTCAAATTCATCTCCCCAAACTTCAC 220484 Query 133047 TCAAACCGGGACACTCGTCAGGACACATCAATGACCATTTTTC-TCCTGCGCTCACCCTT 133105 |||||| ||||| | | ||||||||| | ||||| | | || | | || || ||| Sbjct 220483 ACAAACCAGGACATTTATGAGGACACATTAGAGACCAATCGCCATCATCCTCT-ACTCTT 220425 Query 133106 TTCATGAACAACGAAGGTGTCCACATGGCAAAAAATAAATCGCGAGCCTTCATATCT-TC 133164 |||||||||| ||| |||| | |||| |||| |||||||| | || || | | || Sbjct 220424 TTCATGAACAGATCCGGTATCCATAGGGCATAAAACAAATCGCGTG-CTCGATCTTTCTC 220366 Query 133165 CGCGCCCATATTTCGTTTCAAGTCCaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGAT 133224 | | || | ||| |||||| || | ||| |||| ||||| ||||||||||| | Sbjct 220365 CTCACCAAAATTCTTTTTCAAATCTAGAAATTCGAAAACATCTGCGTGCCAAGGCTCCAA 220306 Query 133225 ATATACGGCCAAAGCGCCTTTCCTTTT---ACCTCCCTGATCCACAT 133268 || | || ||||| ||| | ||| ||| |||||||| |||| Sbjct 220305 GTACATAGCAAAAGCACCTGGACGTTTTCCACCACCCTGATCTACAT 220259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429927349015905