Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_007804.2 Length=39104 Score E Sequences producing significant alignments: (Bits) Value seq439 185 2e-42 seq724 102 2e-17 >seq439 Length=76666 Score = 185 bits (204), Expect = 2e-42 Identities = 336/492 (68%), Gaps = 0/492 (0%) Strand=Plus/Minus Query 26925 TTGTGCTTACCGATACAAAATTAAAAAACCTCAAGCCACAGGACAAACTGTACAAAGTTT 26984 || ||||||| || |||||| ||| |||||| || || | |||||||| |||||| | Sbjct 76079 TTATGCTTACAGACACAAAACTAAGAAACCTAAAACCTCGCGACAAACTCTACAAAATCC 76020 Query 26985 CCGATCGTGACGGGCTGTATGTAGCTGTGCTTACGTCAGGTACGGTCTCGTTTCGCTATG 27044 ||||| | |||||||| || |||||||| || | ||| | | ||||| ||||||| Sbjct 76019 CCGATAGAGACGGGCTCTACGTAGCTGTTCTGCCAAGCGGTTCTGCATCGTTCCGCTATG 75960 Query 27045 ACTACCGTATCAACGGTCGCCGCGAAACACTGGTAATCGGGCAGTATGGGCGTGACGGTA 27104 ||||||| || | || | || ||||| || || || ||||| |||||||| Sbjct 75959 ACTACCGCATACATGGCAGGCGTGAAACTTTGACGATTGGTAGATATGGAGCTGACGGTA 75900 Query 27105 TCAGCCTGGCAGAAGCGCGAGAAGAACTGATTGCTGCAAAGAAGCTGCTTAAAGCAGGCC 27164 ||||| | || ||||| || |||||| | | | || || || | ||| | |||| | Sbjct 75899 TCAGCTTAGCCGAAGCCCGTGAAGAATTACATACCGCCAAAAAACAGCTAGAGTCAGGTC 75840 Query 27165 AGTCACCGGCTGCGGCTAAACGTGACGGTATCAAAAAGATTCGTGGTGCCGAGACGTTTG 27224 ||||||| ||||| | ||||| || ||||| || | | ||| || |||| Sbjct 75839 AGTCACCTGCTGCCGTAAAACGAGAAAATATCAGGCAGCTAAAGGCTGCAGATCGCTTTG 75780 Query 27225 CGGTACATACCGACAGTTATATGAAACACGTCATCCTGGCTGAAAGTACCCGCGCAATGA 27284 || |||| | ||||||||| || || | |||||||| || ||||||| Sbjct 75779 AGGACTATACTTTCGCTTATATGAATCATGTGCGATTTGCTGAAAGCACAAAAGCAATGA 75720 Query 27285 AGCAGGCAGTGATCGACCGTGACATACTTCCGGTTCTTGGCAACAAAATGATGGCTGAAA 27344 |||| || || ||||| ||||||||| | || || || || ||| | ||| |||| Sbjct 75719 AGCAAGCGGTTATCGATCGTGACATATTACCTACACTGGGTAAAAAACTTATGCACGAAA 75660 Query 27345 TTACCACATCGATGGTTCGTGATTTGTGTGACAGGATTGTCGAACGCGGTGGTCGGGCAA 27404 | || || | ||| | |||||| | || |||| || |||| ||||| | | | | | Sbjct 75659 TAACTACTACCATGTTACGTGATCTATGCGACAAAATACTCGAGCGCGGGGCTAGATCGA 75600 Query 27405 CAGCAGTGCAGG 27416 ||||| ||||| Sbjct 75599 CAGCAAGGCAGG 75588 Score = 131 bits (144), Expect = 4e-26 Identities = 216/309 (70%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 35183 AAAACAGGCCAGATGAACAAAACAGAATCTGCGTATTGCCAGCACCTTGAGCAGCGTAAA 35242 |||||||| | ||||||||| || ||| ||||| | | || | ||| ||| Sbjct 60427 AAAACAGGGCTGATGAACAAGACCGAAGAGGCGTACAGGCGAGACTTGGAGGTCAAAAAA 60368 Query 35243 CGTGCAGGGGAAGTCGCCTGGTATCGGTTCGAGGGTATCAAGCTGCGGCTGGCTGACAAC 35302 |||||| | | ||||| ||| || || |||||||||| |||| |||||| Sbjct 60367 TCAGCAGGGTTGCTTGTCTGGTTCAAGTTTGAAGGAGTCAAGCTGCGTCTGGGCGACAAC 60308 Query 35303 ACGTTTTATACGCCCGATTTCGCTGTGATGCTCGCCACCGGAGAGATGGAACTGCACGAA 35362 || || || ||||| ||||| | |||||| | | ||| |||||| |||||||| Sbjct 60307 ACATTCTACACGCCTGATTTTGTCGTGATGAACAGCGATGGAACTATGGAAATGCACGAA 60248 Query 35363 GTGAAAGGTTTCTGGACCGACGACGCCAGGGTGAAAACCAAAGTCGCCGCAGATCAGTAT 35422 | ||||| ||||||||||| ||||||||||| |||| ||||||||| || || ||| Sbjct 60247 ATTAAAGGGTTCTGGACCGATGACGCCAGGGTCAAAATCAAAGTCGCTGCTGACATGTAC 60188 Query 35423 CCGTTCCGAATCATCGGGGT-AACGGTTAAACCAAAGAAAGCAGGTGGTGGCTGGAATAT 35481 || ||| | | | | | || | | | | |||| ||||| || || |||||| | || Sbjct 60187 CCATTCAAATTTTTGGCCATCAAGGCTCAGAGCAAA-AAAGCTGGCGGGGGCTGGCAAAT 60129 Query 35482 CGAAGAGTT 35490 ||||||||| Sbjct 60128 CGAAGAGTT 60120 >seq724 Length=1463 Score = 102 bits (112), Expect = 2e-17 Identities = 167/230 (73%), Gaps = 8/230 (3%) Strand=Plus/Minus Query 20255 ATCACCACTACCTACGCCAATCGGTTGGTGGTGAACTGTGCAGGGTTGGCGTAACCGGCT 20314 |||||||| | | | ||||| | |||||||| ||| | ||| | | ||||||| Sbjct 1345 ATCACCACCTTCGAGGTCAATCT-TGGGTGGTGAGCTGGATGAGTTTGACCTTACCGGCT 1287 Query 20315 AA-AAGGACCCGGCGCACCTTTCGGTGCCCCCACACAGCCCACCATAATACGAATGTGAC 20373 || |||||||||| | |||| ||| |||||| ||||||||||| || | || || Sbjct 1286 AACAAGGACCCGGTGAGCCTTGCGGCTCCCCCATCCAGCCCACCATTATTCTGATATG-G 1228 Query 20374 CGTGCTATACGCATaaaaaaaCCGCTTGCGCGGTG-AATGCGCCTT-TTAGTAACCCGGG 20431 || || |||||||||||| |||| || ||| ||||||||| ||||| | ||||| Sbjct 1227 CGGACT-GACGCATAAAAAACACGCTCTCGGCGTGTTATGCGCCTTGTTAGTTATCCGGG 1169 Query 20432 ACGCCAATCCCGGCACTGGATTTTGCCAGTGCCCGATT-ACTATGGCACA 20480 | | |||||||| ||| || ||||| ||| | |||| ||||| || || Sbjct 1168 AGGTCAATCCCGACACCTGAATTTGCAGGTG-CAGATTGACTATAGCGCA 1120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125008749077292