Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq53 129 6e-25 seq240 118 1e-21 seq89 118 1e-21 seq308 111 1e-19 seq148 100 3e-16 seq260 84.2 2e-11 >seq53 Length=1361919 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||||||||| || ||||| | || || |||||||| || |||||||| | Sbjct 1239759 CCACCACGCAAACGCAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGAC 1239700 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||| |||||||| || || ||| | |||||||| || || || || ||| Sbjct 1239699 AATGTGCGCCCGTCTTCTAGCTGTTTACCAGCGAATATTAAACGTTGTTGATCTGGTGGG 1239640 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| || || ||| | | |||| | | | ||| | |||||||| | ||| | Sbjct 1239639 ATTCCTTCCTTATC-TTGAATCTTAGCTTTAACATTCTCAATAGTATCGGAAGGCTCAAC 1239581 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| || ||||| || || | || || ||||| |||||||| Sbjct 1239580 CTCCAAGGTGACAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 1239533 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||||||||| ||||||||| | ||| || || || || ||||||||||| Sbjct 1239988 GCCACCGCGCAAACGCAACACTAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCCGA 1239929 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| || || | || || || ||| |||| |||||||||||||| || || Sbjct 1239928 GAGAGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGG 1239869 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGA 131185 || ||||| || || ||| || |||| | | | || ||||| |||| | ||| | Sbjct 1239868 AATACCTTCCTTATCTTGGATCTT-AGCTTTAACGTTTTCAACAGTGTCGGAAGGCTCTA 1239810 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| |||||| || || | |||||| || ||||| ||||| Sbjct 1239809 CCTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAAAATTTGCAT 1239761 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||||||| | || ||||| | || || |||||||| || |||||||| | Sbjct 1232798 CCGCCACGCAAACGTAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGAC 1232739 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||| |||| ||| || || ||| ||||||||||||| || || || ||| Sbjct 1232738 AATGTGCGCCCGTCTTCTAACTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGTGGG 1232679 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || || || ||| | | ||| | |||||||| | ||| | Sbjct 1232678 ATTCCTTCCTTATCTTGAATCTTAGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACC 1232619 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||||| || || | || || || ||||| |||||| Sbjct 1232618 TCCAAGGTGATAGTTTTGCCAGTCAATGTCTTGACAAAAATTTGCATG 1232571 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||||||||| ||||| | || || || || || || |||||||| Sbjct 1241561 CCACCGCGGAGACGCAGCACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCCGAA 1241502 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| |||| || ||||| || |||| ||||||||||| || ||||| Sbjct 1241501 AGAGTGCGACCGTCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGA 1241442 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || |||||||| || ||| ||| ||||| | | | || | |||||| | | || | Sbjct 1241441 ATACCTTCTTTATC-TTGAATTTTTGCTTTAACGTTTTCGATAGTATCTGATGGTTCTAC 1241383 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || ||| || || | ||||||||| || || ||||| Sbjct 1241382 CTCCAAAGTAATGGATTTGCCAGTCAAAGTTTTTACAAAGATTTGCAT 1241335 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| ||| ||||| | || || |||||||| | |||||||| Sbjct 1240215 CCACCACGGAGACGCAACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCCGAA 1240156 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| |||| || ||||| || | || ||||||||||| || ||||| Sbjct 1240155 AGAGTGCGGCCGTCTTCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTGGAGGA 1240096 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || |||||||| || ||| ||| ||||| | | | || | |||||| | | || | Sbjct 1240095 ATACCTTCTTTATC-TTGAATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTAC 1240037 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | |||| |||||| || || | |||||| || || ||||||||| Sbjct 1240036 TTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTAACAAAGATCTGCATG 1239988 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || | || ||||| | || ||||||||||||||||| |||||| Sbjct 1234462 CCACCACGCAGGCGTAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCGGAG 1234403 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | || || || ||| |||| |||||||||||||| || || Sbjct 1234402 AGAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 1234343 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || |||| | || | ||||||| | ||||| Sbjct 1234342 ATACCTTCCTTATCCTGGATCTTAGCTTTGACGTTTTCAATGGTATCGGAAGGCTCGACT 1234283 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||||||||| | |||||| ||||| || ||||| Sbjct 1234282 TCCAAAGTGATGGTTTTACCGGTCAAAGTTTTGACGAAGATTTGCAT 1234236 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||||| ||| ||||| | || || || || || || ||||| || Sbjct 1240443 CCACCGCGGAGACGCAACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCGAG 1240384 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || ||||| ||||| || |||| |||||||||||||| ||||| Sbjct 1240383 AGAGTACGACCGTCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 1240324 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || |||||||| || ||| ||| || ||| | | || | |||||| | | || | Sbjct 1240323 ATACCTTCTTTATC-TTGAATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTTCTAC 1240265 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| |||||| || || | |||||| || || || ||||| Sbjct 1240264 CTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAATATTTGCAT 1240217 Score = 91.5 bits (100), Expect = 1e-13 Identities = 111/150 (74%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||| || || || || | || || || ||||| || |||||||| Sbjct 1232571 GCCACCACGCAGACGTAGAACCAAGTGCAATGTTGATTCTTTTTGTATATTGTAATCAGA 1232512 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || || || ||||| || |||| ||||||||||| || ||||| Sbjct 1232511 CAATGTGCGCCCATCTTCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGG 1232452 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || ||||||||||| ||| || ||||| Sbjct 1232451 AATACCTTCTTTGTCTTGGATCTT-TGCTT 1232423 >seq240 Length=301270 Score = 118 bits (130), Expect = 1e-21 Identities = 220/323 (68%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 145097 TACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTT 145156 || ||||| || ||| | || |||||||||| ||| || ||||| |||||||| | | | Sbjct 294233 TAAACGTTTGAAGTGTATGGCTCAAAAGACTGGTTGTTTCCCAGAATTTGAGCAGCAGAT 294174 Query 145157 GCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCC 145216 || | ||||| |||||||| || || || |||| || || | || |||| ||| Sbjct 294173 GCTGCAGGCATTGCAGCCACCAACAAAGAGTTACGCACACCATGAATTTTTATGTGTTCT 294114 Query 145217 TTTAGCGTACCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAA 145276 || || | |||| ||||| || ||| ||| || || ||||||||| || || | | Sbjct 294113 TTAAGAGCCGCCCAGTCCCAAAGATCAGTAGGCGTCTTGTTCCACATGTCATATTGAAGA 294054 Query 145277 ATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGC 145336 ||||| | ||| | ||||| |||| | | | ||| ||| | |||||| | | Sbjct 294053 ATGCCTTTGCTAACTGGGCTACCTTCATATGTTTCGTACGGGCCATATTGTTTGGCCAAC 293994 Query 145337 TCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGC 145396 || || || ||||| | || ||| |||| || || ||| |||||| || | || Sbjct 293993 TCACAGCTAGCCTCTAACGCACCGTAATATATAGTTTCGAAAATTTGTTGATTTAATAGA 293934 Query 145397 ATCGCTTCATCGCTCTCGTACGG 145419 | || | ||||||||||| || Sbjct 293933 ACAGCATTTTCGCTCTCGTATGG 293911 >seq89 Length=807233 Score = 118 bits (130), Expect = 1e-21 Identities = 220/323 (68%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 145097 TACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTT 145156 || ||||| || ||| | || |||||||||| ||| || ||||| |||||||| | | | Sbjct 806577 TAAACGTTTGAAGTGTATGGCTCAAAAGACTGGTTGTTTCCCAGAATTTGAGCAGCAGAT 806636 Query 145157 GCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCC 145216 || | ||||| |||||||| || || || |||| || || | || |||| ||| Sbjct 806637 GCTGCAGGCATTGCAGCCACCAACAAAGAGTTACGCACACCATGAATTTTTATGTGTTCT 806696 Query 145217 TTTAGCGTACCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAA 145276 || || | |||| ||||| || ||| ||| || || ||||||||| || || | | Sbjct 806697 TTAAGAGCCGCCCAGTCCCAAAGATCAGTAGGCGTCTTGTTCCACATGTCATATTGAAGA 806756 Query 145277 ATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGC 145336 ||||| | ||| | ||||| |||| | | | ||| ||| | |||||| | | Sbjct 806757 ATGCCTTTGCTAACTGGGCTACCTTCATATGTTTCGTACGGGCCATATTGTTTGGCCAAC 806816 Query 145337 TCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGC 145396 || || || ||||| | || ||| |||| || || ||| |||||| || | || Sbjct 806817 TCACAGCTAGCCTCTAACGCACCGTAATATATAGTTTCGAAAATTTGTTGATTTAATAGA 806876 Query 145397 ATCGCTTCATCGCTCTCGTACGG 145419 | || | ||||||||||| || Sbjct 806877 ACAGCATTTTCGCTCTCGTATGG 806899 >seq308 Length=190705 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| |||||||||| ||| | ||||| || || || |||||||| || ||||| | | Sbjct 86622 CCACCTCGCAAACGCAACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCGAT 86681 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 ||| |||| || || | || || || ||| |||| || || || ||||| || || Sbjct 86682 AATG-TGCGACCATCTTCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTGG 86740 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGA 131185 ||||| |||||||| ||| | | |||| | | || | |||||| | || ||||| Sbjct 86741 AATTCCCTCTTTGTCC-TGAATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGA 86799 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || || || || |||||||| ||||||||||| Sbjct 86800 CCTCAAGAGTAATGGTCTTGCCCGTAAGGGTTTTTACAAAAATCTGCAT 86848 >seq148 Length=545759 Score = 100 bits (110), Expect = 3e-16 Identities = 111/146 (76%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 146401 ATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAG 146460 ||| ||||| ||||| | | |||||| || || ||||| || | ||||| ||||| || Sbjct 219975 ATATGTTTCAATAGCAGCCTCAATGTCATCACCGTGAATACCAATGGCGACACGCATTAG 219916 Query 146461 CATGTGTTGGGGCCGCTCCGCCACTTGATTGTCAATCTTTAACAAATA--GCCGTTCTCC 146518 ||| ||||| ||||||||||| | || | ||||||||||||||||| ||| ||| Sbjct 219915 CATATGTTGCGGCCGCTCCGCAATTTTACCATCAATCTTTAACAAATAAGATCGT--TCC 219858 Query 146519 AGGGTTTTGTATCCGAAAAATTTGTA 146544 || ||||| | || ||||| ||||| Sbjct 219857 AGAGTTTTAAAACCAAAAAAATTGTA 219832 >seq260 Length=279278 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/135 (74%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||| |||||||||||| ||| ||||| | || || | |||||| || |||||||| | Sbjct 75201 GCCATCGCGCAAACGCAACACCAAATGAAACGTAGATTTCTTTTGTATATTGTAATCACA 75142 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||| |||| || || || ||| |||| ||||| | || | || | Sbjct 75141 CAATGTGCGCCCGTCTTCTACCTTTTTACCAGCGAAGATCAAACGTTATTGAT--GGTGA 75084 Query 131127 GATTCCTTCTTTGTC 131141 ||||||||| || || Sbjct 75083 GATTCCTTCCTTATC 75069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472003058835840