Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq5 154 1e-32 seq53 143 2e-29 seq1189 136 3e-27 seq8 127 1e-24 seq1 127 1e-24 seq308 116 2e-21 seq45 114 9e-21 seq516 102 5e-17 >seq5 Length=4938185 Score = 154 bits (170), Expect = 1e-32 Identities = 226/320 (71%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 6201 TTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATT 6260 ||||| ||||||||||||||||| | || || ||||| |||| | || || ||| Sbjct 24006 TTCTATCGCTACAAAATGCCGCGACTAAAAGCTAAAGTCGAAAGTAAAGACAATGGCATT 23947 Query 6261 AAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTAC 6320 ||||| | || || || ||| | ||||| || || | ||||| || ||||| || Sbjct 23946 AAAACGTTTATAGTTAATATGACCGAAGTGGCACGAGCAATAGGACGACCAGCCACTTAT 23887 Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || | ||||| || | |||||||| || |||| || ||||||||| | |||||||| Sbjct 23886 CCAAACAAATACTTTAGTTGCGAACTGGGTACTCAAACTCAGTTTGATTAGAAAAACGAA 23827 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 || |||||||||||||| || || | | || || | || || |||| || || ||| Sbjct 23826 CGTTTCATCGTTAACGGCTCTCACGATGCGGCAAAATTACAAGATCTACTCGATGGTTTT 23767 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGTCT 6500 || | ||||||||| | ||| ||| |||||| ||||| || || |||| || || Sbjct 23766 ATACACAAGTTTGTCTTATGTTCTCAATCCGATAATCCGGAAACTGAACTTACAGTTTCA 23707 Query 6501 ACCAAGAGAAACACCATCTC 6520 | |||| | ||||| || Sbjct 23706 GCTAAGAATCAAACCATATC 23687 >seq53 Length=1361919 Score = 143 bits (158), Expect = 2e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | ||||||||| |||||||| | || |||||||| ||||||||||||| Sbjct 1239761 TACCACCACGCAAACGCAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAG 1239702 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || |||| |||| ||||| || || ||||||| ||||||||||| | | Sbjct 1239701 ACAATGTGCGCCCGTCTTCTAGCTGTTTACCAGCGAATATTAAACGTTGTTGATCTGGTG 1239642 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| || || ||| || || ||||||| | |||||| | |||| Sbjct 1239641 GGATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTCTCAATAGTATCGGAAGGCTCAA 1239582 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || || || | |||||| || ||||| || |||||||| |||||||| || Sbjct 1239581 CCTCCAAGGTGACAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTT 1239530 Score = 127 bits (140), Expect = 1e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | |||||| || |||||||| | || |||||||| ||||||||||||| Sbjct 1232800 TACCGCCACGCAAACGTAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAG 1232741 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || |||| ||||| ||||| || || || |||| || |||||||| | | Sbjct 1232740 ACAATGTGCGCCCGTCTTCTAACTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGTG 1232681 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| || || ||| || ||| ||||||| | |||||| | |||| Sbjct 1232680 GGATTCCTTCCTTATCTTGAATCTTAGCCTTAACATTCTCAATAGTATCGGAAGGCTCAA 1232621 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || || || |||||||| || ||||| || || || || || |||||| Sbjct 1232620 CCTCCAAGGTGATAGTTTTGCCAGTCAATGTCTTGACAAAAATTTGCATG 1232571 Score = 123 bits (136), Expect = 2e-23 Identities = 168/233 (72%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||||||||||||||| | || |||||||| | |||||||| Sbjct 1240219 CATT-CCACCACGGAGACGCAACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAAT 1240161 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | || |||| ||||||||||| || ||||| || | || || ||||| | Sbjct 1240160 CCGAAAGAGTGCGGCCGTCTTCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTG 1240101 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | |||||||| || ||||||| || || || | || |||||| || Sbjct 1240100 GAGGAATACCTTCTTTATCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTT 1240041 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | ||||| || ||||| ||||| || ||||| ||||| || || ||||||||| Sbjct 1240040 CTACTTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTAACAAAGATCTGCATG 1239988 Score = 109 bits (120), Expect = 4e-19 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||||| ||||||||| | ||| || || || |||||||||| Sbjct 1241565 CATT-CCACCGCGGAGACGCAGCACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAAT 1241507 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | || |||| ||||||||||| || ||||| || | || || ||||| | Sbjct 1241506 CCGAAAGAGTGCGACCGTCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTG 1241447 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | |||||||| || ||||||| || || || | || ||||||| || Sbjct 1241446 GAGGAATACCTTCTTTATCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCTGATGGTT 1241387 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || ||||| | ||| || ||||| ||||| || || || ||||| Sbjct 1241386 CTACCTCCAAAGTAATGGATTTGCCAGTCAAAGTTTTTACAAAGATTTGCAT 1241335 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||||||||||||||| | ||| || || || |||||||| | Sbjct 1240447 CATT-CCACCGCGGAGACGCAACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGT 1240389 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | ||| |||| || | ||||| || ||||| || | || || || || | Sbjct 1240388 CCGAGAGAGTACGACCGTCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTG 1240329 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | |||||||| || ||||||| ||| || || | || |||||| || Sbjct 1240328 GAGGAATACCTTCTTTATCTTGAATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTT 1240269 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || ||||| ||||| || ||||| ||||| || ||||| ||||| Sbjct 1240268 CTACCTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAATATTTGCAT 1240217 Score = 98.7 bits (108), Expect = 7e-16 Identities = 166/239 (69%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||| | ||||| || | || || ||||| ||||||||||||||| Sbjct 1232570 CCACCACGCAGACGTAGAACCAAGTGCAATGTTGATTCTTTTTGTATATTGTAATCAGAC 1232511 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || | |||||| || ||||| || | || || ||||||| || Sbjct 1232510 AATGTGCGCCCATCTTCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGA 1232451 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||| || ||| || ||||| | | ||||| ||| ||| Sbjct 1232450 ATACCTTCTTTGTCTTGGATCTTTGCTTTTACATTTTCAATTGTATCAGATGGTTCCACT 1232391 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTACAAGCT 38329 ||||| || || ||||| || ||||| || || ||||| || ||||| ||||| || || Sbjct 1232390 TCTAAAGTGATTGTTTTGCCAGTCAATGTCTTTACGAAGATTTGCAT-TTTTAGAATCT 1232333 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || || || |||||||| ||||| |||||||||||| || ||||| | Sbjct 1234464 TACCACCACGCAGGCGTAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCGG 1234405 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | ||| | || || |||||||| || || || || | || || || || | || Sbjct 1234404 AGAGAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGG 1234345 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| || ||| || || || || || | | ||||| | || | Sbjct 1234344 GAATACCTTCCTTATCCTGGATCTTAGCTTTGACGTTTTCAATGGTATCGGAAGGCTCGA 1234285 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || |||||||| ||||| ||||| ||||| || ||||| Sbjct 1234284 CTTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTGACGAAGATTTGCAT 1234236 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| || || ||||| || || || ||||| ||||| ||||| |||| | || | Sbjct 1241778 ACGTAAGACTAAATGGAGTGTTGATTCTTTTTGGATATTTTAATCGGACAGAGTGCGCCC 1241719 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 ||| || |||||||| || ||||| || | || |||||||||| | | ||||| || Sbjct 1241718 GTCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGTTGATCGGGAGAAATACCTTCCTT 1241659 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT-TCAACTTCTAATGTAA 38280 || |||||| || || | | || |||||| | || || || || || |||| Sbjct 1241658 ATCTTGGATTTTTGCTTTAACCGTTTCGATAGTATC-CGACGGCTCTACCTCCAAAGTAA 1241600 Query 38281 TAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| || ||||| ||||| || || || ||||| Sbjct 1241599 TAGTTTTGCCAGTCAAAGTTTTAACAAAGATTTGCAT 1241563 >seq1189 Length=3914 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 3851 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAATAATCTCGT 3792 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 3791 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3757 >seq8 Length=4454774 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2794343 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAAGAATCTCGT 2794402 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||||||||||||||| || Sbjct 2794403 TAATCCATTCATGCGCGTCACTAATTAGATGATGA 2794437 >seq1 Length=10097680 Score = 127 bits (140), Expect = 1e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||| |||||| | |||||||| | || || || || ||||||||||||| Sbjct 7547617 TACCACCTCGCAAACGAAGTACCAAATGCAATGTCGATTCTTTCTGTATATTGTAATCAG 7547558 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| || | || || |||||||| || || || || | ||||| ||||| | | Sbjct 7547557 ACAAAGTCCGCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAG 7547498 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||| ||||||||| |||||| ||| ||||| | | ||| || | |||| Sbjct 7547497 GAATGCCCTCTTTGTCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAA 7547438 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 |||| || ||||| ||||| || || | ||||| ||||| || ||||| ||| Sbjct 7547437 CTTCCAAAGTAATTGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTT 7547385 >seq308 Length=190705 Score = 116 bits (128), Expect = 2e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||||| |||||||||||| | ||| | ||| || ||||||||||| ||||| || Sbjct 86621 ACCACCTCGCAAACGCAACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCGA 86680 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || || | || || ||||||||||| || || || | |||||||| |||| || Sbjct 86681 TAATGTGCGACCATCTTCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTGG 86740 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | || ||||||||| ||| || |||||||| | | |||||| || || Sbjct 86741 AATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGAC 86800 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 || | ||||| || || ||||| | |||||| || || |||||||| || || Sbjct 86801 CTCAAGAGTAATGGTCTTGCCCGTAAGGGTTTTTACAAAAATCTGCATATTGTA 86854 >seq45 Length=1499061 Score = 114 bits (126), Expect = 9e-21 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 6161 GATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCC 6220 |||||| | | || ||||| |||||||| | || ||||| || || |||||||| Sbjct 610730 GATGGGTTCGGTTAATGTAAACCGTAATGTTACCGATATTTTCTATCGGTATAAAATGCC 610789 Query 6221 GCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACAT 6280 ||| | || || ||||| ||||| || || || |||||||| || || || || || Sbjct 610790 GCGACTACAAGCTAAAGTCGAAGGTAAAGGCAATGGCATTAAAACGGTTATAGTTAATAT 610849 Query 6281 GCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTG 6340 | | ||||| || || | ||||| || ||||| || || || ||||| || || || Sbjct 610850 GGCCGAAGTGGCACGAGCAATAGGACGACCAGCCACTTATCCAACCAAATACTTTGGTTG 610909 Query 6341 CGAACTTGGCGCTCAGACGCAGTTTGAT 6368 |||||| || ||||| || ||||||||| Sbjct 610910 CGAACTGGGTGCTCAAACTCAGTTTGAT 610937 Score = 87.8 bits (96), Expect = 1e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 ||||| || |||||||||||||| || || | | || || |||| || ||||||| Sbjct 611038 AACGAACGTTTCATCGTTAACGGCTCTCACGATGCGGCAAAATTGCAAGATCTACTTGAT 611097 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTA 6492 || ||||| ||||| ||||| | |||| ||||||||||| ||||| || || |||| Sbjct 611098 GGTTTTATACGCAAATTTGTCTTATGTCCTGAATGCGATAATCCGGAAACTGATCTTA 611155 >seq516 Length=57182 Score = 102 bits (112), Expect = 5e-17 Identities = 80/96 (83%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955 |||||| ||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 42740 TAAGCCTGTTCCCTTGGCTGTGGTTTTTCTAGATAGTAGATAGGGACAGAAAGAATCTCA 42799 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| ||||||||||||||||||||| |||||| Sbjct 42800 TTAATTTGTTCATGCGCGTCACTAATTAGCTGACGA 42835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334940460338981