Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq53 158 1e-33 seq308 131 1e-25 seq1 122 8e-23 >seq53 Length=1361919 Score = 158 bits (174), Expect = 1e-33 Identities = 165/214 (77%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| |||||||| |||||||| || |||||||| || | || || || | || Sbjct 1241334 AATGCAAATCTTTGTAAAAACTTTGACTGGCAAATCCATTACTTTGGAGGTAGAACCATC 1241393 Query 25058 TGACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || |||||||| | | ||||||||| ||| || |||||||| ||||| || || | Sbjct 1241394 AGATACTATCGAAAACGTTAAAGCAAAAATTCAA-GATAAAGAAGGTATTCCTCCAGATC 1241452 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || ||||| ||||||||||||||||| | ||||||| | ||||||| Sbjct 1241453 AGCAGCGTTTGATCTTTGCTGGCAAACAATTAGAAGACGGTCGCACTCTTTCGGATTACA 1241512 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| || |||||||| || | ||||| ||||| Sbjct 1241513 ATATACAGAAAGAATCAACTTTGCATTTGGTGCT 1241546 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || |||||||| || ||| | || || | || || ||| |||| Sbjct 1241562 AATGCAAATCTTTGTTAAAACTTTGACTGGCAAAACTATTACTTTGGAGGTAGAGCCGTC 1241621 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || |||||||| | | || ||||||| || || ||||| ||| | || || || Sbjct 1241622 GGATACTATCGAAACGGTTAAAGCAAAAATCCAAGATAAGGAAGGTATTTCTCCCGATCA 1241681 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || ||||| ||||||||||| ||||| | |||||| || |||||| || Sbjct 1241682 ACAGCGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGGCGCACTCTGTCCGATTAAAA 1241741 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| ||||||||||| || || |||||||| || | || | ||||| Sbjct 1241742 TATCCAAAAAGAATCAACACTCCATTTAGTCTTACGTCTTCGCGGAGG 1241789 Score = 140 bits (154), Expect = 3e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || |||||||| || ||| |||| || | ||||| || | || Sbjct 1239989 ATGCAGATCTTTGTTAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTAGAACCATCG 1240048 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || |||||||| | | ||||||||| ||| || |||||||| ||||| || || || Sbjct 1240049 GATACTATCGAAAACGTTAAAGCAAAAATTCAA-GATAAAGAAGGTATTCCTCCAGATCA 1240107 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | |||||||| ||||||||||||||||| | |||||| | |||||||| Sbjct 1240108 GCAGCGTTTGATTTTTGCTGGCAAACAATTAGAAGACGGCCGCACTCTTTCGGATTACAA 1240167 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208 | | ||||| ||||| || | ||||| ||| Sbjct 1240168 TGTACAAAAGGAATCTACATTGCATTTGGTG 1240198 Score = 136 bits (150), Expect = 3e-27 Identities = 164/220 (75%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || ||||||||| || |||||||| ||||| || ||| | ||||| | |||||||| | Sbjct 1232340 AAAAATGCAAATCTTCGTAAAGACATTGACTGGCAAAACAATCACTTTAGAAGTGGAACC 1232399 Query 25055 GTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 ||||| || || || | || ||||||| | || ||||||||||| ||||| || Sbjct 1232400 ATCTGATACAATTGAA--AATGTAAAAGCAAAGATCCAA-GACAAAGAAGGTATTCCTCC 1232456 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 || || ||||| | || ||||| ||||||||| | ||||||| ||||| || || Sbjct 1232457 CGATCAGCAGCGTTTGATCTTTGCTGGCAAACAACTGGAAGATGGGCGCACATTGTCTGA 1232516 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 ||||||||| ||||||||||| || | || || || ||| Sbjct 1232517 TTACAATATACAAAAAGAATCAACATTGCACTTGGTTCTA 1232556 Score = 127 bits (140), Expect = 2e-24 Identities = 157/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| || |||||||| || ||| |||| || | || || || | || Sbjct 1240216 AATGCAAATATTTGTTAAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAACCATC 1240275 Query 25058 TGACACTATCG-AGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || ||||||| | | | | ||||||| ||| || |||||||| ||||| || |||| Sbjct 1240276 GGATACTATCGAAAACGTTAAGGCAAAAATTCA-AGATAAAGAAGGTATTCCTCCAGACC 1240334 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || ||||| |||||||| | ||||| | ||| ||| | || |||| Sbjct 1240335 AGCAGCGTTTGATCTTTGCTGGCAAACAGCTGGAAGACGGTCGTACTCTCTCGGACTACA 1240394 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 |||| || |||||||| || | ||||| ||| Sbjct 1240395 ATATACAGAAAGAATCAACTTTGCATTTGGTG 1240426 Score = 122 bits (134), Expect = 8e-23 Identities = 156/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||||||||||||||| ||||||| | ||||| ||| | || Sbjct 1234236 ATGCAAATCTTCGTCAAAACTTTGACCGGTAAAACCATCACTTTGGAAGTCGAGCCTTCC 1234295 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| |||| || ||| || || ||||| ||||| || || Sbjct 1234296 GATACCATTGAAAACGTCA---AAGC-TAAGATCCAGGATAAGGAAGGTATTCCCCCAGA 1234351 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || || || || |||||||| ||||||| || ||| | |||||| Sbjct 1234352 CCAGCAGCGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTCTCTCCGATTA 1234411 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 || |||||||| || || || || ||||| || Sbjct 1234412 TAACATTCAAAAGGAGTCTACTCTCCATTTGGT 1234444 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || ||| | ||||| | || || ||| | || Sbjct 1232572 ATGCAAATTTTTGTCAAGACATTGACTGGCAAAACTATCACCTTGGAGGTTGAGCCTTCC 1232631 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| ||| | ||| | || | ||| || || ||||| || ||||| || || Sbjct 1232632 GATACTATTGAGAATGTTAAGGCTAAGATTCAA-GATAAGGAAGGAATCCCACCAGATCA 1232690 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || || || ||||| |||||||| | ||||| || |||||||| Sbjct 1232691 ACAGCGTTTAATCTTCGCTGGTAAACAGTTAGAAGACGGGCGCACATTGTCTGATTACAA 1232750 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||| ||||| ||||| ||| | ||||| || Sbjct 1232751 TATACAAAAGGAATCTACGTTGCATTTGGT 1232780 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| ||||| || ||| | |||| | || || ||| | || Sbjct 1239532 AATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTGTCACCTTGGAGGTTGAGCCTTC 1239591 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| ||| | || |||| || | ||| || || ||||| || ||||| || Sbjct 1239592 CGATACTATTGAG--AATGTTAAAGCTAAGATTCAA-GATAAGGAAGGAATCCCACCAGA 1239648 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | || || || || ||||| ||||||| | ||||| || ||||| Sbjct 1239649 TCAACAACGTTTAATATTCGCTGGTAAACAGCTAGAAGACGGGCGCACATTGTCTGATTA 1239708 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||||| ||||| ||||| ||| | ||||| || Sbjct 1239709 CAATATACAAAAGGAATCTACGTTGCATTTGGT 1239741 >seq308 Length=190705 Score = 131 bits (144), Expect = 1e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| || | || || || |||| || | || || ||| | ||| Sbjct 86848 ATGCAGATTTTTGTAAAAACCCTTACGGGCAAGACCATTACTCTTGAGGTCGAGCCCTCT 86789 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || |||| || || | ||| |||||||| || |||||||| ||||| Sbjct 86788 GATACTATTGAAAATGTGAAAGCCAAGATTCAG-GACAAAGAGGGAATTCCACCCGACCA 86730 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || || || |||||||| ||||||| |||||| | ||||| || Sbjct 86729 ACAACGATTGATCTTCGCTGGAAAACAATTGGAAGATGGTCGCACATTATCGGATTATAA 86670 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208 ||||||||||||||||||| ||||| | ||| Sbjct 86669 TATTCAAAAAGAATCCACGTTACATCTTGTG 86639 >seq1 Length=10097680 Score = 122 bits (134), Expect = 8e-23 Identities = 171/237 (72%), Gaps = 10/237 (4%) Strand=Plus/Plus Query 24978 TAATTTGTACAAAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATC 25037 |||||| || ||| | || ||||||||| || || || ||| | || || ||| | || Sbjct 7547370 TAATTTTTAGAAAGC--AAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACAATT 7547427 Query 25038 ACAGTCGAAGTGGAGTCGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGA 25093 || | ||||| ||| | || |||||||| || |||| | || |||| ||| || Sbjct 7547428 ACTTTGGAAGTTGAGCCTTCCGACACTATTGAAAATGTCA---AGGCCAAAATTCAG-GA 7547483 Query 25094 CAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGA 25153 |||||| || ||||| || || || || || | || || || ||||||||||| ||||| Sbjct 7547484 CAAAGAGGGCATTCCTCCAGATCAGCAACGTTTGATCTTCGCTGGCAAACAATTGGAAGA 7547543 Query 25154 TGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||| || ||||||||||| || |||||||| || | ||||| || || Sbjct 7547544 TGGGCGGACTTTGTCTGATTACAATATACAGAAAGAATCGACATTGCATTTGGTACT 7547600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433319280763565