Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_008464.1 Length=60238 Score E Sequences producing significant alignments: (Bits) Value seq439 241 5e-59 >seq439 Length=76666 Score = 241 bits (266), Expect = 5e-59 Identities = 408/591 (69%), Gaps = 0/591 (0%) Strand=Plus/Minus Query 44768 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 44827 ||| ||||| ||||| ||| |||| |||||| | ||| |||||| |||| || || Sbjct 70427 CCACTGCTCGCCAAAGGTAAAGCCAAGTTCAGCTAACGCCATATCCATTCTTTCTATAAA 70368 Query 44828 CTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAACCACGACATA 44887 ||| || || ||| ||||| | | ||||| || || || || |||| | ||| | Sbjct 70367 CTCTGGTACGGACTCTTCAAATTTTGAAATGTATTTATCGTCTCGTTCAATAATGACGTT 70308 Query 44888 ATGCAGTCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 44947 || ||||||||||| ||||| || ||||||||||| ||||| | ||| || ||||| | Sbjct 70307 GTGAAGTCCTTCACGTTTCATTCGAGGGTCATAGTTAGCAAAATGCCATGCGTCTTTCCC 70248 Query 44948 CGTCACCCACATGCTGTACTGCACCTGGGCCAGGTAAGCCGATTTTATGGCCTCGAAACC 45007 ||| ||||||||||| |||| ||||| |||| || ||||||| ||| | || || || Sbjct 70247 CGTAACCCACATGCTAAACTGGACCTGAGCCATATATTCCGATTTGATGCCGTCAAAGCC 70188 Query 45008 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGCCGTT 45067 | || | || || || || || || || ||||| || || || | |||||| || Sbjct 70187 ATTCAGTCTAAAATTAATAAAGTCGCGTGATGTAAATGGACACTTTAATTCAAGTCCCAG 70128 Query 45068 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCTGTACGCATACTTTCGTCGCGATAGAT 45127 || ||||| || |||||||| ||||| ||| ||||||| ||||| | || Sbjct 70127 CCCATCACTACAGTCGCCATCGGGGGAGCACGCTACACGCATATCGTCGTCCTTGAATAT 70068 Query 45128 AATCGGGGATTCAGTAACATTCACGCCGGAGGTGAACTCAAACAGGACTCTGGCGTCGTT 45187 || ||| || |||| | | || | |||||||||||||| ||| || | | Sbjct 70067 GATGGGGACGTCGATAACGGTTAACCCTGTAGTGAACTCAAACAGTCGTCTTGCTACCTC 70008 Query 45188 CTCGTATTGTTTTCCCCAGGCCAGTGCTTTGGCATTAACTTCCGGAGCCACACCGGTGCA 45247 |||| || ||||||||| | || | | || || ||||| |||| ||||| || Sbjct 70007 TTCGTTTTCTTTTCCCCATTCTAGCGGCCTTGCCTTCACTTCGGGAGATTGCCCGGTACA 69948 Query 45248 AACCTCAGCAAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCATTTCTTTCCTGA 45307 || ||| |||| ||| ||| |||||| ||| ||| | || | |||||| || ||||| Sbjct 69947 AATCTCGGCAATCAGCTTGTTGAAGTAAGACCGCTTCGTATCCGTCCATTTGTTGCCTGA 69888 Query 45308 GCGGGGTTTTGCTATCACGTTGTGAACTTCTGAAGCTGTAAGGACGCCGAG 45358 || || | | |||||| | | | ||||| || || | | |||| || Sbjct 69887 ACGTGGGCTGGAAATCACGCAGGAAGCCTCTGAGGCGGTTATGGCGCCAAG 69837 Score = 217 bits (240), Expect = 6e-52 Identities = 664/1018 (65%), Gaps = 40/1018 (4%) Strand=Plus/Minus Query 53367 GTTGGCGGTTTTGCTTATATCGCTGAGATCGCAAAGAACACGCCGAGCGCCGCAAACATC 53426 ||||| || ||||| || | || |||| ||| ||| || || || ||||| Sbjct 62021 GTTGGTGGATTTGCCTACCTGATGGAAATCGTCAAGTTCACCCCAAGTAGTGCCAACATG 61962 Query 53427 GTTGCCTATGCAATGCA-GGTTCGCGAAACCGCAATGGAACGCTACGCCATCA--ACCGC 53483 || || ||||| ||| |||||| || |||| ||||| ||||||| ||| || || Sbjct 61961 GTCGCTTATGCC-TGCGTGGTTCGTGATTCCGCCATGGAGCGCTACGGGATCGCTACAGC 61903 Query 53484 ATGACTGAAGCGACGGAATTGCTCTATTCCCGCAACGGAATGACTGCGACGCAGAAGTAC 53543 | | || || | ||| | ||| |||||||||| |||| | | | |||| Sbjct 61902 AAACCAGATA--ACCGCGTTGTTGTATGCCCGCAACGGTATGAGCACAAGAGAAAAGTTT 61845 Query 53544 GAAGCTATTCAGGCGATTTTCACGCAACTGACAGACCATGCAAAAACCGGATCGCGTCGC 53603 ||| | || || || | || | || | || || || | ||||| || |||||| Sbjct 61844 GAATCAATCCAAACGTTGTTTAGCGAAATTACCGATCACGTCAAAACGGGTAAGCGTCGA 61785 Query 53604 GGCCTTCGCTCATTTGGCGAGGTCATGGAAGACTGGGTTAGCGACCTTGAGAAGCGATTT 53663 || | || | || || || |||| || ||| || ||| | || |||| ||| Sbjct 61784 GGTGCGAGGCCACTAGGGGACGTGATGGCTGATTGGCTTGACGAAGTAGATCAGCG-TTT 61726 Query 53664 GACCCATC--AGGCGAACAACGGGGAATGAGCACAGGGATCCCATCGCTGGACAGGATGC 53721 | || | || || | | ||||| || || |||||||| ||||| || | | Sbjct 61725 CAGTGATACTACTCGGACTA-GAGGAATTAGAACGGGGATCCCGTCGCTAGATGAACTTC 61667 Query 53722 TGTCACCGAAAGGTCTGGTGAAAGGCTCTCTGTTTGTCATTGGCGCTCGCCCTAAGATGG 53781 | ||| || || ||||| || || ||| | ||||| || ||||| || || |||| Sbjct 61666 TCCAACCCAAGGGACTGGTTCGTGGTTCGCTGATGGTCATCGGTGCTCGTCCCAAAATGG 61607 Query 53782 GGAAAACGACGCTATACAGCCAGATGGCAATCAATTGCGCAGTGCATGAGAAAAAGCCCG 53841 | || || ||| | ||| || |||| | |||||||| |||| || || ||| | Sbjct 61606 GCAAGACAACGTTGTACTCACAATTGGCTCTTAATTGCGCCTTGCACGAAAATTTGCCTG 61547 Query 53842 CTCTGATGTTCAGCCTTGAAATGCCAGGTGATCAGATACTGGAAAAACTGGTAGGGCAGA 53901 | | ||||||||||||| ||||||| | || ||| | || || | || ||| Sbjct 61546 CCGTACTGTTCAGCCTTGAGATGCCAGACAAGCAAATATTCGAGCGCATGATCGGCCAGT 61487 Query 53902 AGTCTGGTGTTAACCCGAATATTTTTTACCTTCCGGCGACAAATGACGCCGATGACGGCT 53961 || || | || | ||||||||||| | ||| | |||| |||| || | Sbjct 61486 CATCAGGAATCAATACTGATATTTTTTACTGT--GGC----ACTGACAACGATAGCGATT 61433 Query 53962 ATCAGGGTGATTACGATGGTGACTTCAACAGGGCGATCGAAACAGCCAATCGCTTGAGTG 54021 || | | || | ||| | | || | |||| || || Sbjct 61432 -TC--GCTTATGCCAATGCTAAA---------GCATTGGAAA------------TGGTTG 61397 Query 54022 AAATCGACATGCTTTACATCGACGACACGCCGGGATTATCTCTGGCTCAAATCGTCAGCG 54081 || || || |||| | | || ||||| |||||| ||| || ||| || | Sbjct 61396 AATCCGGCAATCTTTTCGTTGATGACACACCGGGAGCCAGTCTAAGCCATATCATCGCAG 61337 Query 54082 AAAGCCGTCGAATCAAGCGAGAAAAAGGATGTGTTGGCATGATTCTGGTCGATTACCTGA 54141 |||||||| | || ||||| || || || || ||| | |||||||||||||||| Sbjct 61336 AAAGCCGTAGGATTAAGCGTCAATGCGGTAAGGTAGGTATGGTGCTGGTCGATTACCTGA 61277 Query 54142 CACTAATGACCGCTGAGAAGGCCGATCGCAACGACCTTGCTTACGGCATGATCACCAAAG 54201 | || ||| || ||||| ||||| ||||||||| | || ||||| || || ||||| | Sbjct 61276 CGCTTATGCGGGCAGAGAAAGCCGACCGCAACGACTTGGCGTACGGGATTATAACCAAGG 61217 Query 54202 GACTGAAGAACCTTGCCAAAGAGCTTGATTGCGTTGTTGTGCTTCTGACGCAACTTAACC 54261 |||| |||||||||||||| |||||||||||| |||| ||||| || || || | |||| Sbjct 61216 GACTCAAGAACCTTGCCAAGGAGCTTGATTGCATTGTGGTGCTGCTAACACAGTTAAACC 61157 Query 54262 GCGCACTGGAAAGCCGAACCAATAAACGCCCATTACCAAGTGACTCACGAGATACAGGGC 54321 ||| || || | || || |||||||| ||||||||| ||||||| || | Sbjct 61156 GCGACCTTGAGAAACGTGTTAACAAACGCCCCCAGCCAAGTGACAGCAGAGATACTGGCC 61097 Query 54322 AGATTGAACAGGATTGCGATTATTGGGTGGGGATCCATCGTGAAGGTGCTTTTGATGA 54379 |||||||||| || || ||||| ||| |||||||| | || |||||||||| ||| || Sbjct 61096 AGATTGAACAAGACTGTGATTACTGGCTGGGGATCTACCGGGAAGGTGCTTATGACGA 61039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192636223172400