Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq184 345 5e-90 seq143 129 7e-25 seq136 125 8e-24 >seq184 Length=525875 Score = 345 bits (382), Expect = 5e-90 Identities = 505/704 (72%), Gaps = 10/704 (1%) Strand=Plus/Minus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 ||| |||||| |||||||||| ||| |||| ||| |||||| || | | | || Sbjct 28966 ATCCGCTACATATTCTATGTATTGACACATACTTTCATTATTCATACCGATTAAATTGAC 28907 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045 |||||||| || |||| || || || || ||| |||||| || | | ||||| | Sbjct 28906 TGGTAGAGCTTCTGTCAGAAATTCCTTTTCAATTTTAACGGCATCGGTTATTATTTCCAA 28847 Query 93046 TACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGG 93104 || | | |||||| |||||||||| | ||| || ||||||| |||||| ||| Sbjct 28846 TATGCGT-TCTTTGGTCGGTTTTTGTATCAAATATTTAAACATTAAAACCGCAAATTCGC 28788 Query 93105 TATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTC 93164 |||||||||||| || |||||||| || ||||| ||||||| ||| || | | || Sbjct 28787 AATGTAAACCTTCATCGCGTGATATTAATTCATTAGAAAATGTTAGACCCGGCATTATTC 28728 Query 93165 CTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGG 93224 | |||||||| ||||||||||| ||||||||||| ||| ||| ||||||||||| |||| Sbjct 28727 CACGTTTCTTAAGCCAAAATATCGAAGCAAAACTTCCACTAAAGAATATACCTTCGACGG 28668 Query 93225 CTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA-TTACTGCTGATCCATTTTAAA 93283 | ||||| || | | ||| || ||||||| || ||| || | ||||| |||| Sbjct 28667 CAGCAAAAGCTATGACACGCTCACCAAAATTCGCCGAACGCGATGAT-ATCCAAGCTAAA 28609 Query 93284 GCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCT 93343 ||||| || ||||| || |||| | || | || || || || ||||| || ||||| Sbjct 28608 GCCCATTCCGCTTTCTTTTTAACTAACGGCATCGTCTCAATGGCATTAAAAAGATAATCG 28549 Query 93344 CGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACA 93403 || || | || |||| || |||| || || | | | ||||||||| || || ||| Sbjct 28548 CGTTCTTTCGGATCTGCGATAAATGTTTCAATAAGTAAACTATACATTTCCGAGTGTACA 28489 Query 93404 TTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGA 93463 || || || || ||||| || || || || || | |||||| || | || ||||||||| Sbjct 28488 TTTTCGATGGCTATTTGAAAACCATAAAAGCAACGAGCTTCGGTTACTTGAACTTCTTGA 28429 Query 93464 GAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAAT 93523 ||||| | || || | ||| ||||| || || || || ||||| |||||||||||||| Sbjct 28428 GAAAAACGTTCCACTAAATTCTCATTAACAATGCCGTCAGATGCCGCAAAAAAAGCCAAA 28369 Query 93524 ATATGCTTTATAAAATGTTTCTCATCATC-TTTAAGCTTATCCCAATCGGAT--AGATCT 93580 | ||| |||||||| |||||||| |||| | ||||||| ||| |||||| Sbjct 28368 ACATGTGAAATAAAATGACGTTCATCATCAGTTAATC-GCTCCCAAT--GATCAAGATCT 28312 Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 | ||||| || ||||| | |||||||| || ||||| || Sbjct 28311 GCAGCGAGATCAACCTCTTCCGCCGTCCAAAAAGAAGCTTCAGC 28268 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 93626 TTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGG 93685 ||||| ||||| | ||| ||||| |||||||||||||||| ||||||||||| ||||| Sbjct 26765 TTTTTATACATTTTCCAAATGTCCGGATATTGAATTGGAAAAATGACAAAACGTTTAGGA 26706 Query 93686 TTATCTTTTAGTAACGGCTCTAGTTGTGGGTCAAA 93720 || ||||| || || ||||||| |||||||| Sbjct 26705 TTCTCTTTAAGCAATGGCTCTATGGACGGGTCAAA 26671 >seq143 Length=561092 Score = 129 bits (142), Expect = 7e-25 Identities = 83/90 (92%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 329757 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 329698 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTA 126352 |||||||||||||||||||||||||| ||| Sbjct 329697 GTGGGTTCGAACCCCACACCTGACAAGTTA 329668 Score = 129 bits (142), Expect = 7e-25 Identities = 86/95 (91%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 |||||||||||||||||| |||||||||||||||||||||| |||||||| | |||| Sbjct 371209 ACAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGGGA 371268 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTA 126355 |||||||||||||||||||||||||||| || ||| Sbjct 371269 GCGTGGGTTCGAACCCCACACCTGACAAGTTGTTA 371303 >seq136 Length=583107 Score = 125 bits (138), Expect = 8e-24 Identities = 80/86 (93%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 263717 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 263658 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||||| Sbjct 263657 GTGGGTTCGAACCCCACACCTGACAA 263632 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 264213 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 264272 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 264273 GTGGGTTCGAACCCCACACCTGACA 264297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556849307785240