Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1129 96.9 7e-15 seq292 96.9 7e-15 seq519 93.3 9e-14 seq91 91.5 3e-13 seq36 89.7 1e-12 seq33 89.7 1e-12 >seq1129 Length=4299 Score = 96.9 bits (106), Expect = 7e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 142050 CATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCG 142109 |||||| || ||||||| ||| ||||||||||||||||||||||||||| ||||||||| Sbjct 617 CATGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCG 558 Query 142110 ACCCCCGCCAGAGACGCCAGGAT 142132 | |||||| || || | | |||| Sbjct 557 ATCCCCGCAAGGGATGTCTGGAT 535 >seq292 Length=235873 Score = 96.9 bits (106), Expect = 7e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 142050 CATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCG 142109 |||||| || ||||||| ||| ||||||||||||||||||||||||||| ||||||||| Sbjct 71131 CATGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCG 71190 Query 142110 ACCCCCGCCAGAGACGCCAGGAT 142132 | |||||| || || | | |||| Sbjct 71191 ATCCCCGCAAGGGATGTCTGGAT 71213 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| Sbjct 74358 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 74417 Query 142112 CCCCGCCAGAGACGC 142126 |||||| || || || Sbjct 74418 CCCCGCAAGGGATGC 74432 >seq519 Length=44041 Score = 93.3 bits (102), Expect = 9e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 142498 GAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGT 142557 |||| ||||||| |||||||||||||||||| ||||||||||||| |||||||||| Sbjct 37319 GAGA-AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGT 37377 Query 142558 TCGAGCCCCACATCGGGC 142575 ||||||||||| | |||| Sbjct 37378 TCGAGCCCCACGTTGGGC 37395 >seq91 Length=788834 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 158511 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 158570 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 158571 CCCCACGTTGGGC 158583 >seq36 Length=1998672 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1082726 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1082667 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1082666 CCCACGTTGGGC 1082655 >seq33 Length=1656226 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1400906 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1400847 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1400846 CCCACGTTGGGC 1400835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027815057718491