Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_008717.1 Length=36415 Score E Sequences producing significant alignments: (Bits) Value seq550 583 2e-162 >seq550 Length=29371 Score = 583 bits (646), Expect = 2e-162 Identities = 924/1312 (70%), Gaps = 32/1312 (2%) Strand=Plus/Minus Query 13537 CCCGGACGGCCAGCACGAAGCCATTGCGGCGCCGCGTGGTAATGCCAAGTCCACCCTGGT 13596 |||| | ||| |||| || |||||||| ||||||||||| | |||||||| || ||||| Sbjct 17434 CCCGAAAGGCGAGCAGGACGCCATTGCCGCGCCGCGTGGGGAGGCCAAGTCAACGCTGGT 17375 Query 13597 GAGCCAGATATTCGTGATCTGGTGCGTACTCACCGGCCGCAAGCATTACCCCCTGATCAT 13656 |||||| | || ||| | ||||| | | |||| |||||| || | ||| | | Sbjct 17374 CAGCCAGCTGTTTGTGCTGTGGTGTCTGGTGCGCGGCATCAAGCACTATGCGCTGGTAGT 17315 Query 13657 CATGGATGCCTTCGAACAGGCCGCCACGATGCTGGAGGCGATCAAGGCGGAGCTGGAGTT 13716 |||||| || |||| |||||| | ||||||| || || |||||||| |||||||| || Sbjct 17314 GATGGATTCCATCGACCAGGCCTACCCGATGCTCGAAGCCATCAAGGCCGAGCTGGAATT 17255 Query 13717 CAACCCGCGCCTGGCCATGGACTTCCCCCAGGGCGCCGGCAAGGGCCGCGTTTGGCAGGT 13776 ||||| || ||| ||||||||| | | | ||| |||||||| |||||| | Sbjct 17254 TAACCCCCGGCTGCTGGCTGACTTCCCCGAAGCCTGCGGGGTAGGCCGCGTCTGGCAGAT 17195 Query 13777 CGGCACCATCGTTACGGCGAACGATGC-CAAGGTCCAGGTCTTCGGCTCCGGCAAGCGGA 13835 ||||||||| | ||| |||||| |||||| ||||| ||| ||| || | Sbjct 17194 GGGCACCATCCTGACGCGCAACGATATGCAAGGTGCAGGTGGCCGGTAGCGGTAAAAAGC 17135 Query 13836 TGCGCGGCCTTCGACACGGCCCGCACCGTCCTGACCTGGTGATCGGCGACGACCTGGAGA 13895 |||||||||| || ||||| ||| |||| |||||||||||||| ||||| | |||| Sbjct 17134 TGCGCGGCCTGCGCCACGGGCCGTACCGCCCTGACCTGGTGATACTGGACGATATTGAGA 17075 Query 13896 ACGACGAGAACGTCCGCAGCCCGGAGCAGCGCGACAAGCTGGAAAACTGGCTGAAGAAAA 13955 |||||||| | || |||| |||||| ||||||||||| ||||||| |||||||| |||| Sbjct 17074 ACGACGAGCAGGTGCGCAACCCGGACCAGCGCGACAAACTGGAAAGCTGGCTGAGAAAAA 17015 Query 13956 CCGTTCTGTCCCTCGGCTCGGCCGACGACACCATGGACGTGATCATCATCGGGACCATCC 14015 |||| ||| | || ||| || | || | | || ||| || ||||| ||||||| Sbjct 17014 CCGTGCTGCCGCTGGGCGGTGCGGGCGCAAAACTCGATGTGGTCTATATCGGCACCATCC 16955 Query 14016 TTCACTACGACTCGGTCCTGTCGCGCCTGCTGAAAAACCCGCTGTGG-AAGCGGCGCAAG 14074 | || |||||||||||| | || ||| ||||| ||||| ||||| | ||| | | Sbjct 16954 TGCATTACGACTCGGTCTTATCACGCACCCTGAATAACCCATTGTGGCGACAGGCAC-GG 16896 Query 14075 TTCAAGGCGATCATCGAATGGCCGCACCGCATGGACCTGTGGGAGAAGTGGGAGGAACTT 14134 | ||||| | | | |||||| | || |||||||||| |||||| | | Sbjct 16895 CTTAAGGCCCTGCGCCAGTGGCCGGTGAACCTGTCGCTGTGGGAGACCTGGGAGCAGCGC 16836 Query 14135 CTGCTCAACTCCGACGACGAGGGCGCCGCCGCTCTGGCCTTCT--ACCAGGAACGCGCCG 14192 ||| | |||| | || | ||| || | ||| || | ||| || || || || Sbjct 16835 TTGCGTA------ACGAGGGGGAGGACGCGGCGCAGGCATTTTACACCCGGCAC-CG-CG 16784 Query 14193 CCGCCATGGAGGACGGCGCGATCATCTGCTGGCCGGATGGGCAGCCCCTCTACAAGCTTA 14252 | ||||| || |||||| ||| |||| | | | | || || | || | Sbjct 16783 TGGAAATGGAAGATGGCGCGGAGGTCTCCTGGTCCGCCCGCCCGCTGCT---GACCCTGA 16727 Query 14253 TGGTGAAACGTGCCCGCGATGGGCACTCGGCGTTCGACTCGGAACAGCAGAACGACCCAG 14312 || | || ||||| || || ||| | | || || | || | ||||| ||||| | Sbjct 16726 TGCATATCCGCGCCCGTGACGGTCACGCCACCTTTGATGCCGAGTACCAGAATGACCCGG 16667 Query 14313 TCCAGGGCGAGAACGCCCCCTTCGCC----GCCTGCATCACGTTCTGGGTCAACCGCCTG 14368 || || || | || | || ||| |||||||| |||||||||||||| || Sbjct 16666 TCAGCGGTGAAGATGCGCTGTTTGCCCACTGCCTGCAT----TTCTGGGTCAACCGGCTT 16611 Query 14369 GCGCAGTGGATGTTCTACGGCGCGTGCGACCCGTCCCTGGGTAAGCAAGGTTCCAGCCGC 14428 ||||| | ||||| || || |||||||| ||| || ||| || ||||||| Sbjct 16610 AACGAGTGGGTCTTCTATGGGGCCTGCGACCCCAGCCTCGGCAAGGCCGGGGCCAGCCGT 16551 Query 14429 GACCC--CAGCGCCATCCTGGTGGGTGGGTTCAACCGGGAGACAGGCGTCCTGGACGTGG 14486 ||||| |||||| | ||||| ||||| || || || | || ||||| ||||| |||| Sbjct 16550 GACCCGTCAGCGC--TGCTGGTCGGTGGCTTTAATCGCGCCACCGGCGTGCTGGATGTGG 16493 Query 14487 TCGAGGCCGCCATCCGCAAACGCCTGCCGGACAAGATCATCGAGGACATCATCGCCATGC 14546 | || || || ||||| || ||||||||| || ||| | || || || ||| Sbjct 16492 TGGAAGCGCAGATACGCAAGCGGCTGCCGGACGCCATTATCAGCAATATTATTGCTCTGC 16433 Query 14547 AGCGGGCCTATCACTGCCTGGTGTGGGGCGTTGAGGCGGTCCAGTTCCAGGAGTTCCTGC 14606 | || |||||||||||||| |||||| |||||||||| ||||| ||||||||||||| Sbjct 16432 AAAAGGAATATCACTGCCTGGTCTGGGGCATTGAGGCGGTGCAGTTTCAGGAGTTCCTGC 16373 Query 14607 GCACCGAGCTGGTGAAGCGCTCCGCCAAGGCTGGCTGCCCAGTACCTGCCCGAGCGATCA 14666 ||||||||||| | |||||| | || || ||| ||| || || || || || || | Sbjct 16372 GCACCGAGCTGATTAAGCGCGCGGCTCAGCTGGGCCACCCGGTGCCGGCGCGGGCCATTA 16313 Query 14667 CGCCACACGCCGACAAGCTACTGCGCATCGAAAGCCTCCAGCCGCACATGGCCAACGGCC 14726 || || ||||||||||| |||| ||||| | ||| ||||| || |||| ||||| | Sbjct 16312 TCCCCCATGCCGACAAGCTGTTGCGTATCGAGACCCTGCAGCCCCATATGGAAAACGGGC 16253 Query 14727 TGATCCGTCTGCATCCAAGCCAGACCGTCCTGGAACAACAGCTGCGCCA--CTTCCCGGC 14784 | ||||| ||||| | ||||||||| |||| ||| ||||||||||| |||||| Sbjct 16252 TTATCCGGCTGCACGCCAGCCAGACCACCCTGATACAGCAGCTGCGCCATTTTTCCCG-- 16195 Query 14785 CGCAGACCACGACGATGGCCCCGACGCCCTACACATGCTCTGGATGCTGGCC 14836 ||| ||||| ||||| ||||| ||||| || || |||||||||| | ||||| Sbjct 16194 CGCCGACCATGACGACGGCCCGGACGCGCTGCATATGCTCTGGACGTTGGCC 16143 Score = 100 bits (110), Expect = 7e-17 Identities = 160/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 16875 CCGCCTGGATACCATCTACCAGACCAACATGCAGGCGGCCTACATGGCAGGGCGCTAC-- 16932 ||| ||||| || || | | ||||| | ||| | ||||| ||||| |||||||| Sbjct 14245 CCGGCTGGAGACGATTTTTCGCACCAATACCCAGTCTGCCTATATGGCCGGGCGCTATCA 14186 Query 16933 GCGGCCGCCTACGAAGCCAGGGAAACCCACCCTTACTGGATGTATGTGGCGGTGATGGAT 16992 ||||| || ||| | || | || |||||| |||||||||||||||||| Sbjct 14185 GCGGCTGCGCGAGAA--CGTCGACCAGCGGCCCTACTGGCAGTATGTGGCGGTGATGGAC 14128 Query 16993 GGCGTTACCCGGCCCAGCCATGCCGCCCTGCATGGGAAAGTGTTCAGGTGGGACGATCCG 17052 || ||||| |||||||||||||| |||||||| |||||| | | |||||| || Sbjct 14127 AGCCACACCCGCCCCAGCCATGCCGCGCTGCATGGCCGGGTGTTCCGTTATGACGATGCG 14068 Query 17053 ATCTGGCAGCACATCACCCCGCCCAATGGCTACAACTGCCGGTGCCGG 17100 |||| | | | || || || |||||||||||||| |||||| Sbjct 14067 GGCTGGGATACCCTGTTTCCCCCGAACGGCTACAACTGCCGCTGCCGG 14020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116404117779774