Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq53 120 2e-22 seq1 100 2e-16 >seq53 Length=1361919 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| ||||||| || || |||||||||||||| |||| ||| | | Sbjct 1240216 AATGCAAATATTTGTTAAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAACCATC 1240275 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | ||||| ||||||| |||||||| ||| | ||| | |||| Sbjct 1240276 GGATACTATCGAAAACGTTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGACCA 1240335 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | ||||||||||||||||| || ||||| ||| | | || ||||| Sbjct 1240336 GCAGCGTTTGATCTTTGCTGGCAAACAGCTGGAAGACGGTCGTACTCTCTCGGACTACAA 1240395 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||| ||||| ||||| ||| | ||| |||| || ||| | || || ||| Sbjct 1240396 TATACAGAAAGAATCAACTTTGCATTTGGTGTTGCGTCTCCGCGGTGGA 1240444 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | ||||| || || |||||| ||||||| |||| ||| | | Sbjct 1241334 AATGCAAATCTTTGTAAAAACTTTGACTGGCAAATCCATTACTTTGGAGGTAGAACCATC 1241393 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | |||| ||||||| |||||||| ||| | ||| | | || Sbjct 1241394 AGATACTATCGAAAACGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCA 1241453 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | |||||||||||||||||| ||||||| ||| | | |||||||| Sbjct 1241454 GCAGCGTTTGATCTTTGCTGGCAAACAATTAGAAGACGGTCGCACTCTTTCGGATTACAA 1241513 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||| ||||| ||||| ||| | ||| |||| | ||| | || || ||| Sbjct 1241514 TATACAGAAAGAATCAACTTTGCATTTGGTGCTGCGTCTCCGCGGTGGA 1241562 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| ||||||| || || || ||||||||||| ||||| ||| | | Sbjct 1239989 ATGCAGATCTTTGTTAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTAGAACCATCG 1240048 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | |||| ||||||| |||||||| ||| | ||| | | || Sbjct 1240049 GATACTATCGAAAACGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 1240108 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | | || ||||||||||||||| ||||||| ||| | | ||||||||| Sbjct 1240109 CAGCGTTTGATTTTTGCTGGCAAACAATTAGAAGACGGCCGCACTCTTTCGGATTACAAT 1240168 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 | || ||||||||||| | ||| |||| || ||| | || || ||| Sbjct 1240169 GTACAAAAGGAATCTACATTGCATTTGGTGTTGCGTCTCCGTGGTGGA 1240216 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCG- 21891 ||||||||| ||| ||||||| || || |||||||| ||||| |||| || |||| Sbjct 1241562 AATGCAAATCTTTGTTAAAACTTTGACTGGCAAAACTATTACTTTGGAGGTAGA-GCCGT 1241620 Query 21892 CAGAAACGGTGGC--CGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | || || | | || | | ||||||||| | ||||| || ||| | || | Sbjct 1241621 CGGATACTATCGAAACGGT-TAAAGCAAAAA-TCCAAGATAAGGAAGGTATTTCTCCCGA 1241678 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 |||||| | | |||||||||||||||||| | ||||| ||| || ||||||| Sbjct 1241679 TCAACAGCGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGGCGCACTCTGTCCGATTA 1241738 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| || || ||||| || || ||| | || |||||| | || ||||| Sbjct 1241739 AAATATCCAAAAAGAATCAACACTCCATTTAGTCTTACGTCTTCGCGGAGG 1241789 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || ||||| || |||||||| || ||| |||| || | | Sbjct 1232572 ATGCAAATTTTTGTCAAGACATTGACTGGCAAAACTATCACCTTGGAGGTTGAGCCTTCC 1232631 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| || ||| ||||| || || | || | | ||| Sbjct 1232632 GATACTATTGAGAATGTTAAGGCTAAGATTCAAGATAAGGAAGGAATCCCACCAGATCAA 1232691 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | | ||||| ||||| ||||| ||||||| || || | ||||||||| Sbjct 1232692 CAGCGTTTAATCTTCGCTGGTAAACAGTTAGAAGACGGGCGCACATTGTCTGATTACAAT 1232751 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || ||||||||||| | ||| |||| |||||||| || || || Sbjct 1232752 ATACAAAAGGAATCTACGTTGCATTTGGTCTTACGTTTGCGTGGCGG 1232798 >seq1 Length=10097680 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 ||||||||||| || ||||||| | || |||||||| ||||| ||||| || | Sbjct 7547386 AAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACAATTACTTTGGAAGTTGAGCCT 7547445 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 | || || | | || | ||| |||||| || |||||||| | ||| | | Sbjct 7547446 TCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGACAAAGAGGGCATTCCTCCAGAT 7547505 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || | | ||||| |||||||||||| | |||||| ||| || | |||||| Sbjct 7547506 CAGCAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGCGGACTTTGTCTGATTAC 7547565 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| ||||| ||||| || | ||| ||||| | ||||| ||||| || Sbjct 7547566 AATATACAGAAAGAATCGACATTGCATTTGGTACTTCGTTTGCGAGGTGG 7547615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358117593969454