Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq53 149 5e-31 seq308 136 3e-27 seq1 120 3e-22 >seq53 Length=1361919 Score = 149 bits (164), Expect = 5e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 114151 AAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAAT 114210 ||||||| ||||| || | || || ||||| | ||||| || ||||||||||| |||| Sbjct 1234467 AAATACCACCACGCAGGCGTAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAAT 1234408 Query 114211 CGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 || | |||||| |||||| | ||||||||||||| |||| | |||||| ||||| | Sbjct 1234407 CGGAGAGAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTG 1234348 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 | ||||| ||||| || || ||||| ||| | | ||||| ||| |||| | | Sbjct 1234347 GGGGAATACCTTCCTTATCCTGGATCTTAGCTTTGACGTTTTCAATGGTATCGGAAGGCT 1234288 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| |||| || | ||||| ||||||| |||||| || || || ||||| Sbjct 1234287 CGACTTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTGACGAAGATTTGCAT 1234236 Score = 145 bits (160), Expect = 6e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| |||||||| | || |||||||| || ||||||||||| | ||| ||| ||| Sbjct 1239973 CAACACTAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCCGAGAGAGTGCGACCATC 1239914 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| | ||||||||||||| |||| | |||||| ||||| || ||||| ||||| || || Sbjct 1239913 TTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATC 1239854 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 ||||| ||| | | |||||| ||||||| | || || |||| || | || Sbjct 1239853 TTGGATCTTAGCTTTAACGTTTTCAACAGTGTCGGAAGGCTCTACCTCCAAAGTAATGGT 1239794 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||||| |||| |||||| |||||||| ||||| Sbjct 1239793 TTTGCCAGTCAAAGTTTTAACAAAAATTTGCAT 1239761 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| || || | || ||||||||||| || |||||||| Sbjct 1232573 ATGCCACCACGCAGACGTAGAACCAAGTGCAATGTTGATTCTTTTTGTATATTGTAATCA 1232514 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| |||||||| ||||| |||| | |||||| || || ||| Sbjct 1232513 GACAATGTGCGCCCATCTTCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGATCGGGA 1232454 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| |||||| ||||| | ||||| || || | | ||| Sbjct 1232453 GGAATACCTTCTTTGTCTTGGATCTTTGCTTTTACATTTTCAATTGTATCAGATGGTTCC 1232394 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | |||||||| |||| || ||||| || || ||||| Sbjct 1232393 ACTTCTAAAGTGATTGTTTTGCCAGTCAATGTCTTTACGAAGATTTGCAT 1232344 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| | | || || ||||| | ||||||||| ||||| || |||||||| Sbjct 1232801 ATACCGCCACGCAAACGTAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCA 1232742 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| | |||||||||||| |||| | ||||||||| || || Sbjct 1232741 GACAATGTGCGCCCGTCTTCTAACTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGT 1232682 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || |||||| || | | |||| || |||| | || Sbjct 1232681 GGGATTCCTTCCTTATCTTGAATCTTAGCCTTAACATTCTCAATAGTATCGGAAGGCTCA 1232622 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | |||||||| |||| || || |||||||| |||||| Sbjct 1232621 ACCTCCAAGGTGATAGTTTTGCCAGTCAATGTCTTGACAAAAATTTGCATG 1232571 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || | || || ||||| | || |||||||| || || |||||||| Sbjct 1241564 ATTCCACCGCGGAGACGCAGCACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCC 1241505 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| ||| ||||| | |||||| ||||| |||| | |||||| || || ||| Sbjct 1241504 GAAAGAGTGCGACCGTCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGA 1241445 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| |||||||| || ||| ||||| |||| | | ||| | || || | | ||| Sbjct 1241444 GGAATACCTTCTTTATCTTGAAT-TTTTGCTTTAACGTTTTCGATAGTATCTGATGGTTC 1241386 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | | |||||| |||| |||||||||||| || ||||| Sbjct 1241385 TACCTCCAAAGTAATGGATTTGCCAGTCAAAGTTTTTACAAAGATTTGCAT 1241335 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| | | ||| || ||||| | ||||||||| ||||| || |||||||| Sbjct 1239762 ATACCACCACGCAAACGCAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCA 1239703 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| || |||||||||||| | || | ||| ||||| || || Sbjct 1239702 GACAATGTGCGCCCGTCTTCTAGCTGTTTACCAGCGAATATTAAACGTTGTTGATCTGGT 1239643 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || |||||| ||| | | |||| || |||| | || Sbjct 1239642 GGGATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTCTCAATAGTATCGGAAGGCTCA 1239583 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| || ||||| || |||| || || || || |||||||| Sbjct 1239582 ACCTCCAAGGTGACAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 1239533 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 114171 AAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCT 114230 || |||||||| | || ||||||||||| || || |||||| || ||| || ||| Sbjct 1241774 AAGACTAAATGGAGTGTTGATTCTTTTTGGATATTTTAATCGGACAGAGTGCGCCCGTCT 1241715 Query 114231 TCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCG 114290 || | |||||| ||||| |||| | ||||||||| || |||| ||| ||||| || || Sbjct 1241714 TCCAATTGTTTGCCAGCAAAGATCAAACGCTGTTGATCGGGAGAAATACCTTCCTTATCT 1241655 Query 114291 GCAATCTTTTGTTTTAGCTG-TTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 || ||||| |||| | | ||| | || || | | || || |||| || | || Sbjct 1241654 TGGAT-TTTTGCTTTAACCGTTTCGATAGTATCCGACGGCTCTACCTCCAAAGTAATAGT 1241596 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||||| |||| |||||| ||||| || ||||| Sbjct 1241595 TTTGCCAGTCAAAGTTTTAACAAAGATTTGCAT 1241563 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||||| | | || ||||| | ||||| || ||||| |||||||||||| Sbjct 1234237 ATACCGCCACGTAAACGTAGGACCAAATGGAGAGTAGACTCCTTTTGTATGTTGTAATCG 1234178 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||| | ||||||||||||| |||| | |||||| ||||| || Sbjct 1234177 GAGAGAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGG 1234118 Query 114273 GGA 114275 ||| Sbjct 1234117 GGA 1234115 >seq308 Length=190705 Score = 136 bits (150), Expect = 3e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAAT-CGCTCATAGTACGAGAAT 114228 ||| || | ||||| ||| |||||||||||||| || |||| || | || || ||| || Sbjct 86636 CAACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCGATAAT-GTGCGACCAT 86694 Query 114229 CTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGT 114288 |||| | |||||| |||||| |||| | || |||||||| || ||||| || ||||||| Sbjct 86695 CTTCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTGGAATTCCCTCTTTGT 86754 Query 114289 CGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCG 114348 | |||||| ||| | | ||||| || || | || ||||| || | || | | Sbjct 86755 CCTGAATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGACCTCAAGAGTAATGG 86814 Query 114349 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||||| || || |||||||||||||||||||| Sbjct 86815 TCTTGCCCGTAAGGGTTTTTACAAAAATCTGCAT 86848 >seq1 Length=10097680 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || |||||||| || || |||||||| || ||| || |||||| Sbjct 7547597 ACCAAATGCAATGTCGATTCTTTCTGTATATTGTAATCAGACAAAGTCCGCCCATCTTCC 7547538 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 | |||||| |||||| |||| | ||| || || || ||||||||||| |||||||| | Sbjct 7547537 AATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGA 7547478 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 || || || | | ||||| ||||||| | || || |||| || | |||||| Sbjct 7547477 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATTGTTTTG 7547418 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || |||||||| || ||||| ||||| Sbjct 7547417 CCAGTAAGAGTTTTAACGAAAATTTGCAT 7547389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420125946239412