Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_009016.1 Length=38197 Score E Sequences producing significant alignments: (Bits) Value seq735 114 3e-21 seq552 95.1 3e-15 >seq735 Length=2270 Score = 114 bits (126), Expect = 3e-21 Identities = 212/311 (68%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 21029 TGGATGGGTGGCAAGCGCCGCCTGGCTAAACACATCCTGCCAGAGTTCCCAGAGCACGAG 21088 ||||| ||||| ||||| | || | || || ||||| ||||| || || | Sbjct 1078 TGGATTGGTGGAAAGCGTAGACTTATCAGGCATATATTGCCACTTTTCCCGGAACATGGC 1019 Query 21089 TGCTATGTGGAGCCGTTCTGTGGGGCCGCTGCCCTGTTTTTTATGAAGATGCCGACCAAG 21148 |||||||| ||||| || ||||| | ||| ||||||||||| | || | || | || Sbjct 1018 TGCTATGTAGAGCCATTTTGTGGTGGCGCAGCCCTGTTTTTCAGTAAAACACCTTCAAAA 959 Query 21149 GTTGAAGTCATCAACGACGTGAACAGCGACCTGGTTAACCTGTACCGCGTGGTGCAGCAT 21208 ||||| || | || || | || | || || | || ||||| |||||||| |||| Sbjct 958 GTTGAGGTGCTTAATGATATTAATGGGGAGTTGATAAATCTGTATCGCGTGGTAAAGCAC 899 Query 21209 CACCTCGAGGAGTTCGTCCGCCAGTTCAAATGGGCGCTTATCAGCCGCGAGATGTTCAAG 21268 || | || ||||| ||||| ||||| |||||||| | | ||| | || | || || Sbjct 898 CATATGGAAGAGTTTGTCCGACAGTTTAAATGGGCATTAACCAGTAGAAAGCTATTTGAG 839 Query 21269 TGGCTGGACGATACGCCCGTCGAGACCCTGACCGATATTCAGCGTGCTGCCCGGTTCTAT 21328 |||| | | | ||| || | || || |||||||| |||||||| || || ||| Sbjct 838 TGGCAACAAAAGATGCCACCAGAAATTCTCACTGATATTCAACGTGCTGCGCGATTTTAT 779 Query 21329 TACCTGCAGCA 21339 || ||||| || Sbjct 778 TATCTGCAACA 768 >seq552 Length=31981 Score = 95.1 bits (104), Expect = 3e-15 Identities = 205/304 (67%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 21289 CGAGACCCTGACCGATATTCAGCGTGCTGCCCGGTTCTATTACCTGCAGCAGATGGGCTT 21348 ||||||| | |||||||| ||||| || ||||| |||||||||||||| | || || Sbjct 9767 CGAGACCTTAACCGATATCCAGCGCGCGGCCCGTTTCTATTACCTGCAAAAACAGGCGTT 9708 Query 21349 CGGCGCCAAGATTACCGGCCGCACCTTTGGCACGGCCACCACTACGCCGCCAAAACTGAA 21408 ||||| |||| | | | | |||||||||| | | ||||| || ||||| ||||| Sbjct 9707 CGGCGGCAAGGTGGCGGAGCACACCTTTGGCGTGACGACCACCACTGCGCCACGCCTGAA 9648 Query 21409 CCTGCTGCGCCTCGAGGAGACGCTAAGCCAGGCGCACCTACGCCTGAGCCGTGTTTACGT 21468 |||| ||||| | || || || ||| || || || | || | | Sbjct 9647 CCTGTTGCGCATGGAAGAAGAACTGTCGTTGGCTCATCTGCGATTATCACGCACCACCAT 9588 Query 21469 TGAGCACCTGGACT-GGCAGGCGTGCATGGAAAAGTACGACCGACCGCACACCCTGTTTT 21527 ||| || || || | ||| || || || | || ||||| ||||| || ||||| | Sbjct 9587 TGAACAACTTGATTGGGCCAGC-TGTATTGCTCGCTATGACCGTCCGCATACGCTGTTCT 9529 Query 21528 ACCTCGACCCGCCGTACTGGCAGACCGAGGGCTACGGTGTCGACTTCCCCTTCGAGCAAT 21587 || ||| || ||||| ||| ||||||||||| || ||||| || | ||||| | Sbjct 9528 ACTGCGATCCCCCGTATTGGGGCACCGAGGGCTATGGCGTCGATTTTGGTCTGGAGCACT 9469 Query 21588 ATGA 21591 |||| Sbjct 9468 ATGA 9465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122106405980658