Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq53 143 6e-29 seq308 134 3e-26 >seq53 Length=1361919 Score = 143 bits (158), Expect = 6e-29 Identities = 149/194 (77%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || ||||| |||| ||| || || || ||||| |||||||| || |||||| Sbjct 1234426 TCCTTTTGAATGTTATAATCGGAGAGAGTACGGCCATCTTCCAATTGTTTACCAGCGAAG 1234367 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| || |||||| || ||||| ||||||||||| || ||||| ||| Sbjct 1234366 ATCAAACGCTGCTGG---TCTGGGGGAATACCTTCCTTATCCTGGATCTTAGCTTTGACG 1234310 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | |||| | || ||||| | ||||| || || ||||||| ||| ||| Sbjct 1234309 TTTTCAATGGTATCGGAAGGCTCGACTTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTG 1234250 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 1234249 ACGAAGATTTGCAT 1234236 Score = 140 bits (154), Expect = 8e-28 Identities = 171/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||||||||| | || || | ||| | || |||||| || ||||| || || | Sbjct 1241562 TCCACCGCGGAGACGCAGCACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCCGA 1241503 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| ||||||||||||||||| || || ||||||| |||||| ||| ||||| Sbjct 1241502 AAGAGTGCGACCGTCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGA---TCTGG 1241446 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || ||||||||||| || ||||| ||||| |||||||| |||| ||| | ||| Sbjct 1241445 AGGAATACCTTCTTTATCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCTGATGGTTC 1241386 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || | || || | || || |||| ||| || || || || |||||| Sbjct 1241385 TACCTCCAAAGTAATGGATTTGCCAGTCAAAGTTTTTACAAAGATTTGCATT 1241334 Score = 134 bits (148), Expect = 3e-26 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | | || | ||| | || ||| ||||| | ||| || || | Sbjct 1240216 TCCACCACGGAGACGCAACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCCGA 1240157 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| ||||||||||||||||| || || || |||| |||||| ||| ||||| Sbjct 1240156 AAGAGTGCGGCCGTCTTCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGA---TCTGG 1240100 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || ||||||||||| || ||||| ||||| |||||||| |||| ||| | ||| Sbjct 1240099 AGGAATACCTTCTTTATCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTC 1240040 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||| | || || || || || |||| ||| || || || |||||||| Sbjct 1240039 TACTTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTAACAAAGATCTGCAT 1239989 Score = 134 bits (148), Expect = 3e-26 Identities = 148/196 (76%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||||||||| || |||| || ||||| |||||||| |||||||| || || || Sbjct 1241754 TTCTTTTTGGATATTTTAATCGGACAGAGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAA 1241695 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| ||||||||| ||| || || ||||| ||||| |||||||| ||||| || Sbjct 1241694 GATCAAACGCTGTTG---ATCGGGAGAAATACCTTCCTTATCTTGGATTTTTGCTTTAAC 1241638 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||| |||| ||| || ||||| || | || || || || || |||| ||| || Sbjct 1241637 CGTTTCGATAGTATCCGACGGCTCTACCTCCAAAGTAATAGTTTTGCCAGTCAAAGTTTT 1241578 Query 288459 GACGAATATCTGCATT 288474 || || || |||||| Sbjct 1241577 AACAAAGATTTGCATT 1241562 Score = 127 bits (140), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||||||||| | | || | ||| | || |||||| || ||||| ||||| | Sbjct 1240444 TCCACCGCGGAGACGCAACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCGA 1240385 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || || |||||||| | ||||| || || ||||||| |||||| || ||||| Sbjct 1240384 GAGAGTACGACCGTCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGG---TCTGG 1240328 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || ||||||||||| || ||||| || || |||||||| |||| ||| | ||| Sbjct 1240327 AGGAATACCTTCTTTATCTTGAATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTTC 1240268 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || | || || || || || |||| ||| || || ||||| |||||| Sbjct 1240267 TACCTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAATATTTGCATT 1240216 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| ||||| || || | | ||||| ||||||||||| ||||| || ||||| Sbjct 1232763 TTCCTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTCTAACTGTTTACCAGCGAA 1232704 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| | |||||||||| |||||||||||| ||||| || || || || || || || Sbjct 1232703 GATTAAACGCTGTTGATCTGGTGGGATTCCTTCCTTATCTTGAATCTTAGCCTTAACATT 1232644 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| |||| | || || || | ||||| || || || |||| |||||||| Sbjct 1232643 CTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATAGTTTTGCCAGTCAATGTCTTGAC 1232584 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 1232583 AAAAATTTGCAT 1232572 Score = 118 bits (130), Expect = 3e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| ||||| || || | | ||||| |||||||||| ||||| || ||||| Sbjct 1239724 TTCCTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTCTAGCTGTTTACCAGCGAA 1239665 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | ||| |||||| |||||||||||| ||||| || || || ||||| || || Sbjct 1239664 TATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCTTGAATCTTAGCTTTAACATT 1239605 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| |||| | || || || | |||| || ||||| |||| ||||| || Sbjct 1239604 CTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGACAGTTTTCCCAGTCAATGTCTTCAC 1239545 Query 288462 GAATATCTGCATT 288474 ||| ||||||||| Sbjct 1239544 GAAGATCTGCATT 1239532 >seq308 Length=190705 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 || ||||| | |||| ||||||||| |||||||| || | | ||||| || ||||| Sbjct 86640 ACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCGATAATGTGCGACCATCTTCC 86699 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 ||||||||||| |||||||||| || ||||| ||| ||||| ||||| ||||| Sbjct 86700 AATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTGGAATTCCCTCTTTGTCCTGA 86759 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 || || |||||||| ||||| |||| ||| | || || || || || || ||||| Sbjct 86760 ATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGACCTCAAGAGTAATGGTCTTG 86819 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || || |||||||| Sbjct 86820 CCCGTAAGGGTTTTTACAAAAATCTGCAT 86848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179629446254378