Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_010237.1 Length=63395 Score E Sequences producing significant alignments: (Bits) Value seq439 194 7e-45 >seq439 Length=76666 Score = 194 bits (214), Expect = 7e-45 Identities = 367/540 (68%), Gaps = 0/540 (0%) Strand=Plus/Minus Query 5834 CCATTGCTCCCCATATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 5893 ||| ||||| ||| | ||| |||| |||||| | ||| |||||| |||| || || Sbjct 70427 CCACTGCTCGCCAAAGGTAAAGCCAAGTTCAGCTAACGCCATATCCATTCTTTCTATAAA 70368 Query 5894 CTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATA 5953 ||| || || ||| ||||| | | ||||| || || | || ||||| | ||| | Sbjct 70367 CTCTGGTACGGACTCTTCAAATTTTGAAATGTATTTATCGTCTCGTTCAATAATGACGTT 70308 Query 5954 ATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 6013 || || |||||||| ||||| || ||||||||||| ||||| | ||| || ||||| | Sbjct 70307 GTGAAGTCCTTCACGTTTCATTCGAGGGTCATAGTTAGCAAAATGCCATGCGTCTTTCCC 70248 Query 6014 TGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATGGCCTCGAAACC 6073 || ||||||||||| |||| ||||| ||||| || ||||||| ||| | || || || Sbjct 70247 CGTAACCCACATGCTAAACTGGACCTGAGCCATATATTCCGATTTGATGCCGTCAAAGCC 70188 Query 6074 ACCGAGCCGGAACTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGCTCAAGGCCGTT 6133 | || | || || || || || || || ||||| || || || | ||||| || Sbjct 70187 ATTCAGTCTAAAATTAATAAAGTCGCGTGATGTAAATGGACACTTTAATTCAAGTCCCAG 70128 Query 6134 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGCGATAGAT 6193 || ||||| || |||||||| ||||| || |||||| ||||| | || Sbjct 70127 CCCATCACTACAGTCGCCATCGGGGGAGCACGCTACACGCATATCGTCGTCCTTGAATAT 70068 Query 6194 GATCGGGGATTCAGTAACATTCACGCCGGAAGTGAACTCAAAGAGGGTTCCGGCGTCGTT 6253 ||| ||| || |||| | | || | |||||||||||| || || || | | Sbjct 70067 GATGGGGACGTCGATAACGGTTAACCCTGTAGTGAACTCAAACAGTCGTCTTGCTACCTC 70008 Query 6254 CTCGTACTGTTTTCCCCAGGCCAGAGCCTTAGCGTTAACTTCCGGGGCCACACCGGCGCA 6313 |||| | ||||||||| | || | | | || || ||||| || | |||| || Sbjct 70007 TTCGTTTTCTTTTCCCCATTCTAGCGGCCTTGCCTTCACTTCGGGAGATTGCCCGGTACA 69948 Query 6314 AACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGA 6373 || ||| || | ||| ||| |||||| ||| ||| | || | ||| || || ||||| Sbjct 69947 AATCTCGGCAATCAGCTTGTTGAAGTAAGACCGCTTCGTATCCGTCCATTTGTTGCCTGA 69888 Score = 84.2 bits (92), Expect = 9e-12 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 19905 TTAGTTGGTAAAAATGCCCGCTCCCTCATCCTCTGGACAGAACGAGGCGCAGCCCGTCAC 19964 ||||| || ||||| || || |||||||||||||||||||| || || || | || Sbjct 38527 TTAGTCGGCAAAAACGCACGTAGTCTCATCCTCTGGACAGAACGCGGAGCCGCTTGACAT 38586 Query 19965 GCAAAAATGCTCGAAACTGATCAGGCGTGGGATGTGTTCGAAAGACTGGAAGACTGCTAT 20024 || || ||| | || |||||| | || ||||| || ||||| ||||||||| || || Sbjct 38587 GCCAAGATGTTTGAGACTGATAAAGCATGGGAAGTATTCGAGCAACTGGAAGATTGTTAC 38646 Query 20025 TTCA 20028 |||| Sbjct 38647 TTCA 38650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 202735120570516