Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq53 109 6e-19 seq1 105 7e-18 seq164 91.5 2e-13 seq11 86.0 7e-12 seq293 82.4 8e-11 >seq53 Length=1361919 Score = 109 bits (120), Expect = 6e-19 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 |||||||| ||||||||||| || |||||||| ||||||||||||| || || ||| Sbjct 1239750 AAACGCAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGACAATGTGCGC 1239691 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 |||| |||||||| |||||||||||||| | || || || || | ||| | | ||| Sbjct 1239690 CCGTCTTCTAGCTGTTTACCAGCGAATATTAAACGTTGTTGATCTGGTGGGATTCCTTCC 1239631 Query 42111 TTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGT 42169 || | | ||| | || | ||| | || | | || ||| | || || || | || Sbjct 1239630 TTAT-CTTGAATCTTAGCTTTAACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAGGT 1239572 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || ||||| || || | ||||| || ||||| |||||||| Sbjct 1239571 GACAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTT 1239530 Score = 104 bits (114), Expect = 3e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 ||||| || ||||||||||| || |||||||| ||||||||||||| || || ||| Sbjct 1232789 AAACGTAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGACAATGTGCGC 1232730 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 |||| |||| ||| ||||||||||| || | ||||| || || | ||| | | ||| Sbjct 1232729 CCGTCTTCTAACTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGTGGGATTCCTTCC 1232670 Query 42111 TTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGT 42169 || | | ||| | || | || | || | | || ||| | || || || | || Sbjct 1232669 TTAT-CTTGAATCTTAGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAGGT 1232611 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| |||||||| || | ||||| ||||| |||||||| Sbjct 1232610 GATAGTTTTGCCAGTCAATGTCTTGACAAAAATTTGCAT 1232572 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| |||||||| || ||||| ||||||||||||| || || ||| | || || Sbjct 1232552 ACCAAGTGCAATGTTGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCATCTTCC 1232493 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || || || ||||| || || | |||||||| |||| || | | || ||||| | Sbjct 1232492 AGTTGTTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGAATACCTTCTTTGTCTTGG 1232433 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || ||| ||| | | | | || || | |||||| || | ||||| |||||| Sbjct 1232432 ATCTTTGCTTTTACATTTTCAATTGTATCAGATGGTTCCACTTCTAAAGTGATTGTTTTG 1232373 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || || | |||||||| |||||||||||||| Sbjct 1232372 CCAGTCAATGTCTTTACGAAGATTTGCATTTT 1232341 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||||||||||||||||||| |||||||| | ||||||||| | ||||| || | Sbjct 1240204 ACGCAACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCCGAAAGAGTGCGGCC 1240145 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| |||| || || ||||| || || | |||||||| || | || | | || ||| Sbjct 1240144 GTCTTCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTGGAGGAATAC-CTTCTT 1240086 Query 42113 GTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 | ||| |||||| || | || | | | || || | ||| || || | || | Sbjct 1240085 TATCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTAA 1240026 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||| || || | || || |||||||| ||||| Sbjct 1240025 TGGTTTTTCCAGTCAAAGTTTTAACAAAGATCTGCAT 1239989 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||||||||||||||| || || || || |||||||| || | ||||| || | Sbjct 1240432 ACGCAACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCGAGAGAGTACGACC 1240373 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || ||||| || ||||| || || | ||||||||||| | || | | || ||| Sbjct 1240372 GTCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATAC-CTTCTT 1240314 Query 42113 GTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 | ||| |||||| | | || | | | || || | ||| || || | || | Sbjct 1240313 TATCTTGAATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTTCTACCTCCAAAGTAA 1240254 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 |||||||||| || | || || ||||| ||||||||| Sbjct 1240253 TGGTTTTGCCAGTCAAAGTTTTAACAAATATTTGCATT 1240216 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||||||||||| || || || || ||||||||||| | ||||| || | Sbjct 1241550 ACGCAGCACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCCGAAAGAGTGCGACC 1241491 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| |||| || || ||||| || || | |||||||| || | || | | || ||| Sbjct 1241490 GTCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATAC-CTTCTT 1241432 Query 42113 GTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 | ||| |||||| || | || | | | || || | ||| || || | || | Sbjct 1241431 TATCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCTGATGGTTCTACCTCCAAAGTAA 1241372 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 ||| |||||| || | || |||||||||||||||||| Sbjct 1241371 TGGATTTGCCAGTCAAAGTTTTTACAAAGATTTGCATT 1241334 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 ||||||||||| |||||||| || || || || || |||||||| | ||||| || Sbjct 1239978 AAACGCAACACTAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCCGAGAGAGTGCGA 1239919 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 | || || | || ||||||||||| || | ||||||||||| | || | | ||| Sbjct 1239918 CCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCC 1239859 Query 42111 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTG 42170 || || ||| || ||| | | | || |||||| | || || || | || Sbjct 1239858 TTATCTTGGATCTTAGCTTTAACGTTTTCAACAGTGTCGGAAGGCTCTACCTCCAAAGTA 1239799 Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||||||| || | || || ||||| |||||||| Sbjct 1239798 ATGGTTTTGCCAGTCAAAGTTTTAACAAAAATTTGCAT 1239761 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 || || |||||||| | || |||||||||||| || ||||| | ||||| || | Sbjct 1234450 CGTAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCGGAGAGAGTACGGCCA 1234391 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || | || ||||||||||| || | ||||||||||| | || | | ||||| Sbjct 1234390 TCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTA 1234331 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || ||||| | | | || ||| | || || || | |||||| Sbjct 1234330 TCCTGGATCTTAGCTTTGACGTTTTCAATGGTATCGGAAGGCTCGACTTCCAAAGTGATG 1234271 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || | || || || ||||||||||| Sbjct 1234270 GTTTTACCGGTCAAAGTTTTGACGAAGATTTGCAT 1234236 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||| || || ||||| | ||| || ||||| ||||| ||||| | | Sbjct 1241789 CCTCCGCGAAGACGTAAGACTAAATGGAGTGTTGATTCTTTTTGGATATTTTAATCGGAC 1241730 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| ||| |||| || | || || ||||| || || | ||||| || |||| | Sbjct 1241729 AGAGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGTTGATCGGGAGAA 1241670 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||||| || ||||||| ||| | ||| | | || || || || || Sbjct 1241669 ATACCTTCCTTATCTTGGATTTTTGCTTTAACCGTTTCGATAGTATCCGACGGCTCTACC 1241610 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | || || |||||||| || | || || ||||||||||||||| Sbjct 1241609 TCCAAAGTAATAGTTTTGCCAGTCAAAGTTTTAACAAAGATTTGCATT 1241562 >seq1 Length=10097680 Score = 105 bits (116), Expect = 7e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| ||||| | |||||||||||||| || || || ||||||||||||| Sbjct 7547616 ACCACCTCGCAAACGAAGTACCAAATGCAATGTCGATTCTTTCTGTATATTGTAATCAGA 7547557 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||||||| | || || | || || |||||||| || | || ||||| || | || Sbjct 7547556 CAAAGTCCGCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGG 7547497 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | || ||| |||||| ||| |||| | |||| | | | |||||| | || | Sbjct 7547496 AATGCCCTCTTTGTCC-TGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAA 7547438 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 | || | || || |||||||| || || || || || || ||||||||||| Sbjct 7547437 CTTCCAAAGTAATTGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTT 7547386 >seq164 Length=561979 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 259727 CTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 259786 Query 57067 TACTACCGAGGAT 57079 ||||||||||||| Sbjct 259787 TACTACCGAGGAT 259799 >seq11 Length=3762527 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3526337 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 3526396 Query 57067 TACTACCGAGGA-TTGAAT 57084 ||||| |||||| |||||| Sbjct 3526397 TACTATCGAGGATTTGAAT 3526415 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3527414 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 3527355 Query 57067 TACTACCGAGGA-TTGAAT 57084 ||||| |||||| |||||| Sbjct 3527354 TACTATCGAGGATTTGAAT 3527336 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3580669 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 3580728 Query 57067 TACTACCGAGGA-TTGAAT 57084 ||||| |||||| |||||| Sbjct 3580729 TACTATCGAGGACTTGAAT 3580747 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 3670877 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 3670936 Query 57066 ATACTACCGAGGA-TTGAATATAT 57088 |||||| |||||| |||| | ||| Sbjct 3670937 ATACTATCGAGGACTTGAGTTTAT 3670960 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3672851 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 3672910 Query 57067 TACTACCGAGGA-TTGAAT 57084 ||||| |||||| |||||| Sbjct 3672911 TACTATCGAGGATTTGAAT 3672929 Score = 86.0 bits (94), Expect = 7e-12 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3722521 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 3722580 Query 57067 TACTACCGAGGA-TTGAATATA 57087 ||||| |||||| |||||| || Sbjct 3722581 TACTATCGAGGACTTGAATTTA 3722602 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3669690 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 3669749 Query 57067 TACTACCGAGG-ATTGA 57082 ||||| ||||| ||||| Sbjct 3669750 TACTATCGAGGAATTGA 3669766 >seq293 Length=307384 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 148477 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 148536 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 148537 TACTATCGAGGAT 148549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543201589445840