Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_011216.1 Length=37635 Score E Sequences producing significant alignments: (Bits) Value seq550 158 3e-34 >seq550 Length=29371 Score = 158 bits (174), Expect = 3e-34 Identities = 763/1192 (64%), Gaps = 40/1192 (3%) Strand=Plus/Plus Query 3340 GGCCAGCATGTACAGCATATGCAACGCGTCCGGGCCGTCGTCGTGATCGGCTTCCGGATA 3399 ||||| | | | |||||||||| |||||||||||||||||| || ||||| | | | Sbjct 16143 GGCCAACGTCCAGAGCATATGCAGCGCGTCCGGGCCGTCGTCATGGTCGGCGCGGGAAAA 16202 Query 3400 GTGGGTCAACTGCTCGACGAGCACTGTCTGGCTCTTGTGCAGGCGAACCGTGCCGTTCGC 3459 ||| || ||||| | || |||||||| |||||| || | ||||| | Sbjct 16203 ATGGCGCAGCTGCTGTATCAGGGTGGTCTGGCTGGCGTGCAGCCGGATAAGCCCGTTTTC 16262 Query 3460 GCAGTGCGGCTGAAGAGACAGAATCCGCAGGTCTTTGTCGTCGCTGGAGCGGATGCCGCG 3519 || ||||| || | | || |||| |||||| | || | ||| | || Sbjct 16263 CATATGGGGCTGCAGGGTCTCGATACGCAACAGCTTGTCGGCATGGGGGATAATGGCCCG 16322 Query 3520 CGCCGGAACCGGGATCATTCGCTTTTGTGAACGTTCGACCAGCACATCCTTG---AAGAA 3576 |||||| |||||| ||| | || | | |||| || || | ||| Sbjct 16323 CGCCGGCACCGGGTGGCCCAGCTGAGCCGCGCGCTTAATCAGC---TCGGTGCGCAGGAA 16379 Query 3577 CTCCTGGAACTGGATGATCTCGATGCCCCATACCAGGCAACCGTATTGCTCCTGGAACGC 3636 |||||| ||||| | ||| |||||||| |||||||| |||| || || | || Sbjct 16380 CTCCTGAAACTGCACCGCCTCAATGCCCCAGACCAGGCAGTGATATTCCTTTTGCAGAGC 16439 Query 3637 GATAATCGTTTCGATCTGGAGGTTGGGCAACATGCGTGCG-ATCTTCGCTTCCACCACAT 3695 ||||| | ||| | || |||| | || |||| |||| |||||||||||||| Sbjct 16440 AATAATATTGCTGATAATGGCGTCCGGCAGCC-GCTTGCGTATCTGCGCTTCCACCACAT 16498 Query 3696 CGAGCACACCGGTCTTGCGGTTGAGGCCACCGACCAGGCACGCACACGGGTCACGGCCCT 3755 | ||||| ||||| ||| || | |||||||||||| ||| |||||||||||| Sbjct 16499 CCAGCACGCCGGTGGCGCGATTAAAGCCACCGACCAGCAGCGCTGACGGGTCACGGCTGG 16558 Query 3756 TGTTGTGCTTGCCCATCGACGGATCGTGTGCACCGAAGAAAATCCAGGCGTCG-GACGGA 3814 | |||||| | || ||| || || |||| | ||| ||| | ||| Sbjct 16559 CCCCGGCCTTGCCGAGGCTGGGGTCGCAGGCCCCATAGAAGACCCACTCGTTAAGCCGGT 16618 Query 3815 TGCACCCAGTACACCAGCTTCTGG---AACGGCGCGTTCTCGCTATTGGTCGGATCGTTC 3871 || |||||| | ||| ||| ||| |||| | || | || ||| || ||| Sbjct 16619 TG-ACCCAGAAATGCAGGCAGTGGGCAAACAGCGCATCTTCACCGCTGACCGGGTCATTC 16677 Query 3872 TGATATTCGCAATCGAACGCGTGGTGATCGTTC---GCGCGAATCTTCATCAGGCGCAAC 3928 || || ||| ||| || | | |||| ||| ||||| || | ||||||| || | Sbjct 16678 TGGTACTCGGCATCAAAGGTGGCGTGACCGTCACGGGCGCGGATATGCATCAGGGTCAGC 16737 Query 3929 AGCGGGCGCATGGCCGGCCACGATACGACAGCGCCATCGTCCATTTCAGCCTTGCGCTGC 3988 |||||||| ||| | ||| || || | |||||||| |||||||| | | || | Sbjct 16738 AGCGGGCG---GGCGGACCAGGAGACCTCCGCGCCATCTTCCATTTCCACGCGGTGCCGG 16794 Query 3989 GCATAGAACGCGT-CGCATGCTTCCTCGCCTTCATTCAGGAATACTTCTTCCCACTTTTC 4047 | || || || | ||| || ||||| || || || | || | ||||| | || Sbjct 16795 GTGTAAAATGCCTGCGCC-GCGTCCTCCCCCTCGTTACGCAAGCGCTGCTCCCAGGTCTC 16853 Query 4048 CCACAGATCCAGCCGCTTCGGCCACTCGATGATGGCGCGGAATTTATGCGACTC-CCATA 4106 |||||| ||| | |||||||| | | ||| | || ||| || ||| | Sbjct 16854 CCACAGCGACAGGTTCACCGGCCACTGGCGCAGGGC-CTTAAGCCGTGCCTGTCGCCACA 16912 Query 4107 GCGGGCTGCGATGCACGCGGTTGGCCACGCC---GTCGTAATGCAGAATCGTGTTGAGGT 4163 ||| | || || | | | | | | |||||||||||| || ||| || | Sbjct 16913 ATGGGTT---ATTCAGGGTGCGTGATAAGACCGAGTCGTAATGCAGGATGGTGCCGATAT 16969 Query 4164 AGATGATGTCCATCGAGCCGTCCGGCGG-ACCG---AGCGGCATCACGACCTTTTTGACC 4219 ||| | ||||||| | || | | |||| ||||||| |||| ||| | | | Sbjct 16970 AGACCA----CATCGAGTTTTGCGCCCGCACCGCCCAGCGGCAGCACGGTTTTTCTCAGC 17025 Query 4220 CAGCGTTCAAGCTTGTCGCGCTGGGTCTTCTGCTGCACGTTCTCGTCGTTCTCGATGTCG 4279 |||| ||| || |||||||||||| | | |||| | |||||||||||| || ||| Sbjct 17026 CAGCTTTCCAGTTTGTCGCGCTGGTCCGGGTTGCGCACCTGCTCGTCGTTCTCAATATCG 17085 Query 4280 TCGAGCAACACCAGGTCAGGCCGAAACGGGCCATGCCGAATACCGCGCATCCGCTTGCCC 4339 || || | |||||||||||| || |||| || || || | ||||||| | || || Sbjct 17086 TCCAGTATCACCAGGTCAGGGCGGTACGGCCCGTGGCGCAGGCCGCGCAGCTTTTTACCG 17145 Query 4340 GAGCCGAACGCCTGCAGCTTG-ATGTCGGTTGC-CGTTAGCGCAACGCCGACGTTCCAAA 4397 ||| | |||||| |||| || || ||||| ||| || ||| | | ||| | Sbjct 17146 CTACCGGCCACCTGCACCTTGCATATC-GTTGCGCGTCAGGATGGTGCCCATCTGCCAGA 17204 Query 4398 CGCGCCCCTTGCCGACGTGTTCGGGAAAGTCCATCGCGAGCCGCGGATTGTCGGTCAGCT 4457 |||| || ||| | |||||| ||||| | ||||| || || ||||| Sbjct 17205 CGCGGCCTACCCCGCAGGCTTCGGGGAAGTCAGCCAGCAGCCGGGGGTTAAATTCCAGCT 17264 Query 4458 CGACCTTGATCGCCTCCAGCATCATCTGCGCCTGGTCGCTGCTGTCCATCAC 4509 || ||||||| || || |||||| | ||||||||| || |||||||| Sbjct 17265 CGGCCTTGATGGCTTCGAGCATCGGGTAGGCCTGGTCGATGGAATCCATCAC 17316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120308041239414