Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq148 138 1e-27 seq53 127 2e-24 seq240 98.7 1e-15 seq89 98.7 1e-15 seq1 89.7 5e-13 seq308 87.8 2e-12 >seq148 Length=545759 Score = 138 bits (152), Expect = 1e-27 Identities = 365/553 (66%), Gaps = 16/553 (3%) Strand=Plus/Minus Query 152817 TTAAACGATTGGCTCTGATCTATGAAAGCGTTACGGTCGGCCGCCATCTCAATCATGCGT 152876 |||||||||||||| ||||| ||||||||| || ||| | ||||| ||||| | Sbjct 221531 TTAAACGATTGGCTTTGATCGATGAAAGCGCCGCGATCGACAGCCATGTCAAT------T 221478 Query 152877 TTTGCCTTCA------TCTCCCAGGCGGTTTTGTACAAATTTTTAACGCTATCCGGTATA 152930 ||| ||||| | ||||| | ||||| || || | ||| | | | ||||| Sbjct 221477 GTTGACTTCAGTGAAATTTCCCAAACTGTTTTATATAATTCTTTTATGTCTTTAGGTATG 221418 Query 152931 CCTTCAATGTTCTGAATAGAGCCCTTGTGTGCAAA-AATAGCGTTTCGTATTTCGGGCGT 152989 |||| || || || || || || ||||| | |||| |||| || ||| | Sbjct 221417 GCTTCGATTTTTTGTATTGAACCACGATGTGCCCATAATAA-GTTTTTCATGTCGCCATT 221359 Query 152990 GTACACGTTCAGTTTAATGAGGTCATCGATCAAGTACTGGTTGACCACT-TGAAACTCGC 153048 | | |||| | | | || | | ||| | || |||||||| ||||| || | Sbjct 221358 CCAAAGATTCAACTCCGTCAAATCTTTAAGCAAATGATGATTGACCACAATGAAA-TCAC 221300 Query 153049 CCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGC 153108 | | || || |||| ||| || || ||| | || |||||||||||||| |||| Sbjct 221299 CAGATAATACACGTCGTGTATAAACGTTTGAAGTATACGGCTCAAAGGATTCGTTGTTGC 221240 Query 153109 CTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGC 153168 | || |||||||| || | ||| || ||||| ||||||||||||||||| |||| | Sbjct 221239 CAAGAATTTGAGCAGTAGATGCCGTAGGCATTGGGGCCACCAACAAAGAATTACGCACAC 221180 Query 153169 CGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGT 153228 | || | ||||| || || | ||| ||||||||| || | | || || || Sbjct 221179 CATGATTTTTGATGTCATCTTTAAGAGCCGCCCAATCCCAAAGATCAGTAGGCTTCTTGT 221120 Query 153229 TCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGC 153288 |||||||||| || || | | ||| || | || || || || | || ||| Sbjct 221119 TCCACATGTCATATTGAAGAATACCTTTGCTAACTGGGCTACCTTCATATGTTTCGTACG 221060 Query 153289 TGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGG 153348 ||| | ||| ||||| || ||||||||||| | || || || |||||||||||| Sbjct 221059 GGCCATATTGTTTGGCCAACTCACAGCTAGCCTCTAAAGCACCGTAATATATGGTTTCGA 221000 Query 153349 CGATTTGTTTATT 153361 ||||||| ||| Sbjct 220999 AAATTTGTTGATT 220987 >seq53 Length=1361919 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || ||||||||||| |||||||| | | |||| || || || |||||||| || Sbjct 1239988 GCCACCGCGCAAACGCAACACTAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCCGA 1239929 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || || || | ||||||||| | |||| | |||||| ||||| || || Sbjct 1239928 GAGAGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGG 1239869 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| || || ||| || ||| | | ||| || ||||||| | ||| || Sbjct 1239868 AATACCTTCCTTATCTTGGATCTTAGCTTTAACGTTTTCAACAGTGTCGGAAGGCTCTAC 1239809 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| ||||||| |||||| |||||||| ||||| Sbjct 1239808 CTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAAAATTTGCAT 1239761 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || ||||| | |||| || || || || |||||||| Sbjct 1240443 CCACCGCGGAGACGCAACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCGAG 1240384 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||| || || ||||| || | | |||| | |||||| ||||| ||||| Sbjct 1240383 AGAGTACGACCGTCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 1240324 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||||||||| || ||| |||||| |||| | ||| | || || | | || || Sbjct 1240323 ATACCTTCTTTATC-TTGAATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTTCTAC 1240265 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| ||||||| |||||| ||||| || ||||| Sbjct 1240264 CTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAATATTTGCAT 1240217 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| || || || ||||| | | ||||||||||||||||| || ||| Sbjct 1234462 CCACCACGCAGGCGTAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCGGAG 1234403 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || | ||||||||| | |||| | |||||| ||||| || || Sbjct 1234402 AGAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 1234343 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| || || ||| || ||| | | ||| | ||| |||| | ||| || Sbjct 1234342 ATACCTTCCTTATCCTGGATCTTAGCTTTGACGTTTTCAATGGTATCGGAAGGCTCGACT 1234283 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| |||| |||||| || || || ||||| Sbjct 1234282 TCCAAAGTGATGGTTTTACCGGTCAAAGTTTTGACGAAGATTTGCAT 1234236 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | ||| || || | |||| || ||||| || ||||| || Sbjct 1232571 GCCACCACGCAGACGTAGAACCAAGTGCAATGTTGATTCTTTTTGTATATTGTAATCAGA 1232512 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| || || |||||||| || | | |||| | |||||| || || ||||| Sbjct 1232511 CAATGTGCGCCCATCTTCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGG 1232452 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||||||||| ||| ||| ||||| | ||| | || || | | ||||| Sbjct 1232451 AATACCTTCTTTGTCTTGGATCTTTGCTTTTACATTTTCAATTGTATCAGATGGTTCCAC 1232392 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||||| || ||||| || || ||||| Sbjct 1232391 TTCTAAAGTGATTGTTTTGCCAGTCAATGTCTTTACGAAGATTTGCAT 1232344 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || ||||| | | || |||||||| | ||||| || Sbjct 1240215 CCACCACGGAGACGCAACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCCGAA 1240156 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||| || | |||||| || | | | || | |||||| || || ||||| Sbjct 1240155 AGAGTGCGGCCGTCTTCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTGGAGGA 1240096 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||||||||| || ||| |||||| ||||| | ||| | || || | | || || Sbjct 1240095 ATACCTTCTTTATC-TTGAATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTAC 1240037 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||||| ||||||| |||||| ||||| ||||||||| Sbjct 1240036 TTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTAACAAAGATCTGCATG 1239988 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| || ||||| | |||| || || || || ||||| || Sbjct 1241561 CCACCGCGGAGACGCAGCACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCCGAA 1241502 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||| || | |||||| || | | |||| | |||||| || || ||||| Sbjct 1241501 AGAGTGCGACCGTCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGA 1241442 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||||||||| || ||| |||||| ||||| | ||| | || || | | || || Sbjct 1241441 ATACCTTCTTTATCT-TGAATTTTTGCTTTAACGTTTTCGATAGTATCTGATGGTTCTAC 1241383 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | | ||| ||||||| |||||||||||| || ||||| Sbjct 1241382 CTCCAAAGTAATGGATTTGCCAGTCAAAGTTTTTACAAAGATTTGCAT 1241335 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||||||||| || ||||| | | || |||||||| || ||||| || | Sbjct 1239759 CCACCACGCAAACGCAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGAC 1239700 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| ||| || || |||||||| | | |||| ||| ||||| || || || Sbjct 1239699 AATGTGCGCCCGTCTTCTAGCTGTTTACCAGCGAATATTAAACGTTGTTGATCTGGTGGG 1239640 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| | || | ||||| | || | || |||| | ||| || Sbjct 1239639 ATTCCTTCCTTATC-TTGAATCTTAGCTTTAACATTCTCAATAGTATCGGAAGGCTCAAC 1239581 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| ||||||| || || || || |||||||| Sbjct 1239580 CTCCAAGGTGACAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 1239533 >seq240 Length=301270 Score = 98.7 bits (108), Expect = 1e-15 Identities = 209/312 (67%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 153080 AGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCAT 153139 |||| | || ||||| || | ||| || || || |||||||| | | ||| | ||||| Sbjct 294222 AGTGTATGGCTCAAAAGACTGGTTGTTTCCCAGAATTTGAGCAGCAGATGCTGCAGGCAT 294163 Query 153140 GTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTG 153199 |||||||||||||| || |||| || || | |||| || || | ||| Sbjct 294162 TGCAGCCACCAACAAAGAGTTACGCACACCATGAATTTTTATGTGTTCTTTAAGAGCCGC 294103 Query 153200 CCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACT 153259 ||| ||||| || | | || ||| |||||||||||| || || | | ||| || Sbjct 294102 CCAGTCCCAAAGATCAGTAGGCGTCTTGTTCCACATGTCATATTGAAGAATGCCTTTGCT 294043 Query 153260 GGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGC 153319 | || || || || | || ||| ||| | ||| ||||| || |||||||| Sbjct 294042 AACTGGGCTACCTTCATATGTTTCGTACGGGCCATATTGTTTGGCCAACTCACAGCTAGC 293983 Query 153320 CTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTC 153379 ||| | ||| || || ||||| |||||| ||||||| ||| | | | || | ||| Sbjct 293982 CTCTAACGCACCGTAATATATAGTTTCGAAAATTTGTTGATTTAATAGAACAGCATTTTC 293923 Query 153380 GCTCTCGTACGG 153391 ||||||||| || Sbjct 293922 GCTCTCGTATGG 293911 >seq89 Length=807233 Score = 98.7 bits (108), Expect = 1e-15 Identities = 209/312 (67%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 153080 AGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCAT 153139 |||| | || ||||| || | ||| || || || |||||||| | | ||| | ||||| Sbjct 806588 AGTGTATGGCTCAAAAGACTGGTTGTTTCCCAGAATTTGAGCAGCAGATGCTGCAGGCAT 806647 Query 153140 GTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTG 153199 |||||||||||||| || |||| || || | |||| || || | ||| Sbjct 806648 TGCAGCCACCAACAAAGAGTTACGCACACCATGAATTTTTATGTGTTCTTTAAGAGCCGC 806707 Query 153200 CCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACT 153259 ||| ||||| || | | || ||| |||||||||||| || || | | ||| || Sbjct 806708 CCAGTCCCAAAGATCAGTAGGCGTCTTGTTCCACATGTCATATTGAAGAATGCCTTTGCT 806767 Query 153260 GGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGC 153319 | || || || || | || ||| ||| | ||| ||||| || |||||||| Sbjct 806768 AACTGGGCTACCTTCATATGTTTCGTACGGGCCATATTGTTTGGCCAACTCACAGCTAGC 806827 Query 153320 CTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTC 153379 ||| | ||| || || ||||| |||||| ||||||| ||| | | | || | ||| Sbjct 806828 CTCTAACGCACCGTAATATATAGTTTCGAAAATTTGTTGATTTAATAGAACAGCATTTTC 806887 Query 153380 GCTCTCGTACGG 153391 ||||||||| || Sbjct 806888 GCTCTCGTATGG 806899 >seq1 Length=10097680 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||||||| | || ||||| | | || || || || || ||||| || | Sbjct 7547615 CCACCTCGCAAACGAAGTACCAAATGCAATGTCGATTCTTTCTGTATATTGTAATCAGAC 7547556 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| ||| || || | |||||| || | |||| | ||| || || || ||||| Sbjct 7547555 AAAGTCCGCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGA 7547496 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| |||| | || | | ||| | ||||||| | ||| || Sbjct 7547495 ATGCCCTCTTTGTC-CTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAAC 7547437 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||| |||||||| || ||||| ||||| Sbjct 7547436 TTCCAAAGTAATTGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 7547389 >seq308 Length=190705 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || |||||||||||||| || | ||||| | || || |||||||| || || || | | Sbjct 86622 CCACCTCGCAAACGCAACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCGAT 86681 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || | |||||| || | |||| | || |||||||| || || Sbjct 86682 AAT-GTGCGACCATCTTCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTGG 86740 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCA 138565 || || |||||||| ||| | || | ||| | | ||| | || || | | ||| | Sbjct 86741 AATTCCCTCTTTGTCC-TGAATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGA 86799 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || || |||||||||||||||||||| Sbjct 86800 CCTCAAGAGTAATGGTCTTGCCCGTAAGGGTTTTTACAAAAATCTGCAT 86848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496252158384720