Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq771 282 2e-71 seq439 242 1e-59 >seq771 Length=2572 Score = 282 bits (312), Expect = 2e-71 Identities = 706/1052 (67%), Gaps = 24/1052 (2%) Strand=Plus/Plus Query 16217 AGTGCGATGCCATCGTGCAGGCACCTGCACCTTCGCGGCCCATCGAGCGGGGTATCGCCG 16276 ||||||||||||||||||||||||| || | || ||||||||| | ||| | Sbjct 1407 AGTGCGATGCCATCGTGCAGGCACCGTTGCCGGCAAAGCTTATCGAGCGGAGCTACGCGG 1466 Query 16277 GACCGGGGCTGCTGGCCCG---CGTGCTGACCTCGAAGTATGCAGAGCACACCCCGCTGT 16333 | || || |||||||| || |||| || | ||||||| ||||||| ||| ||| Sbjct 1467 GGCCTGGCCTGCTGGCGCGTATCGTGGTGGGC---AAGTATGTTGAGCACATCCCATTGT 1523 Query 16334 ATCGCCAGTCAGAAATATACGGCCGGCAAGGTGTGGAGCTGAGGCGTTCACTGC-TGTCG 16392 | || |||| || || |||| | |||| || |||||||||| || || || || Sbjct 1524 ACCGTCAGTGCGACATCTACGCCTGGCACGGACTGGAGCTGAGCCGCA-ACAGCATGGAT 1582 Query 16393 GGCTGGGTGGATGCATGCTG-CCGGCT-GCTGTCTCCGCTGGAAGAGGCGCTTCATGGCT 16450 |||||||| || | |||| ||| | |||| ||||||| ||||| || | | | Sbjct 1583 CGCTGGGTGC-TGGA-GCTGGCCGACAAGCTGAGCCCGCTGGCGGAGGCCCTGAACCGTT 1640 Query 16451 ATGTCATGACTGACGGCAAACTCCATGCCGATGATACCCCGGTCCAGGTACTGCTGCCGG 16510 |||| || | ||||| | |||||||| || || || || | || || |||| Sbjct 1641 ATGTGCTGGAGGCGGGCAAGGTTCATGCCGACGACACGCCTGTTAAAGTGTTGGCACCGG 1700 Query 16511 GTAATAAGAAGACGAAGACCGGGCGGTTGTGGGCGTATGTTCGTGATGACCGCAATGCAG 16570 | |||||| ||| | | | |||||| || || || ||||||||||| | | Sbjct 1701 GAGCCGGCAAGACGCGAACCAGCCAGCTGTGGGTCTACGTGCGGGATGACCGCAACTCGG 1760 Query 16571 GGTCAGCGTTGGCACCTGCAGTGTGGTTCGCTTACAGCCCGGACAGAAAAGGCATCCATC 16630 |||| | || | || || ||||||||||| ||| ||||| | ||||| |||||| Sbjct 1761 GGTCGTCAATGCCGCCGGCGGTGTGGTTCGCCTACTCGGCGGACCGCAAAGGTGTCCATC 1820 Query 16631 CGCAGACTCATCTTGCCTGCTTCAGCGGTGTGCTGCAAGCGGATGCGTACGCCGGGTTCA 16690 | ||| ||||| | | | | || |||||||| ||||||||||||| ||| | Sbjct 1821 CTCAGCGGCATCTGTCGGAGTACCGGGGCGTGCTGCAGGCGGATGCGTACGGCGGCTATG 1880 Query 16691 ACGAGCTGTATCGCAA-TGGTGGGATAACGGAAGCTGCCTGCTGGGCTCATGCCCGCCGA 16749 | | |||||| || || || ||| | |||||||| || ||| ||| ||||| || ||| Sbjct 1881 ATGCGCTGTA-CGAAAGCGGAGGGGTGACGGAAGCGGCGTGCCTGGCGCATGCGCGACGA 1939 Query 16750 AAGATCCACGATGTGCACGTCCGCATCCCGTCAGCACTGACGGAAGAAGCCCTGGAGCAG 16809 || ||| |||| | ||| ||||| ||| | | |||||| | ||||| || | | | Sbjct 1940 AAAATCAACGACGAGCATGTCCGGCGGCCGACGGACCTGACGCAGGAAGCACTCAAACGG 1999 Query 16810 ATCGGTCAGTTGTACGCCATAGAGGCGGATATAAGGGGAATGCCGGCAGAGCAGCGGCTT 16869 || | |||||| ||||| ||||| ||||| | || | |||| || |||||| Sbjct 2000 ATAGCAGCGTTGTATGCCATCGAGGCCGATATCCGTGGCAGCCCGGAGGAAACGCGGCTG 2059 Query 16870 GCTG-AACGTCAGCGAAAAACGAAAC-CGTTGTTGAAATCCCTGGAAAGCTGGTTGC--G 16925 || | | | || ||||| | | || || || ||| || | |||| | | | Sbjct 2060 GCGGTGAGGAAAGAGAAAA--GTTGCTCGCTGATGCGATCGTTGTATGACTGGATCCAGG 2117 Query 16926 TGAAAAGATGAAGACCCTGTCGCGACACTCAGAGTTGGCGAAGGCGTTCGCGTACGCACT 16985 || || |||| || |||||| ||| | ||| |||| |||||||||| ||| || Sbjct 2118 TGCAA--CTGAAAACGCTGTCGGTGCACGCGGAGATGGCAAAGGCGTTCGGCTACATGCT 2175 Query 16986 TAACCAGTGGCCGGCACTG-ACGTACTATGCGAACGATGGCTGGGTGGAAATCGACAACA 17044 || |||||| || ||| |||| | ||| | || || ||||||| |||||||||| Sbjct 2176 GAAGCAGTGGGACGCGCTGAACGTGTTCTGC-AGTGACGGTCGGGTGGAGATCGACAACA 2234 Query 17045 ACATCGCTGAAAATGCCCTGCGGGCGGTCAGTCTGGGTCGTAAAAACTTCCTGTTCTTCG 17104 ||||| ||| || ||| | ||| || ||||| || |||| |||||||||| Sbjct 2235 ACATCTGTGAGAACGCCTTACGGTGTGTGGCGCTGGGCCGGCGTAACTATCTGTTCTTCG 2294 Query 17105 GCTCTGATCATGGTGGTGAGCGGGGAGCGCTACTGTACAGCCTGATCGGGACGTGCAAAC 17164 |||| || || || || | ||| | | ||||| ||| | || || ||||||| Sbjct 2295 GCTCCGACAGGGGCGGCAAGGCAGCGGCGATCATTTACAGTCTGCTGGGTACCTGCAAAC 2354 Query 17165 TGAATGACGTGGATCCAGAAAGCTACCTTCGCCATGTGCTTGGCGTCATAGCAGACTGGC 17224 |||| | |||||| | || | | ||| | ||||||||| || ||||||| Sbjct 2355 TGAACGGCGTGGAGTCTGAGGCATGGTTGCGCGACGTGCTTGGCAAAATCAGTGACTGGC 2414 Query 17225 CGGTCAACCGGGTCAGCGAACTGCTTCCGTGG 17256 | |||||||| ||||||||| || ||| Sbjct 2415 CATCAAACCGGGTGCACGAACTGCTGCCCTGG 2446 Score = 114 bits (126), Expect = 5e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15372 ATTTGGCTGGTTGCCGGTATCACCGATATGAGAAATGGCTTCAACGGCCTGGCTGCGAAA 15431 || |||||||| ||||| ||||||| ||| | || ||||||||||| ||||| || Sbjct 588 ATCTGGCTGGTCGCCGGCGTCACCGACATGCGCAACGGCTTCAACGGTCTGGCGTCGCGC 647 Query 15432 GTACAAACGGCGCTGAAAGACGATCCCATGTCCGGCCATGTTTTCATTTTCCGGGGCCGC 15491 ||||| | | ||| || |||||||| | ||| || | || || ||||| |||||| Sbjct 648 GTACAGAGCGTGCTCAACGACGATCCGTTCAGCGGACACCTGTTTATCTTCCGCGGCCGC 707 Query 15492 AGCGGCAGTCAGGTTAAA-CTGCTGTGGTCCACCGGTGACGGACTGTGCCTCCTGACCAA 15550 ||||| | || | |||| ||||||||| || || || || || ||||| | ||| Sbjct 708 CGCGGC-GACATGATAAAGCTGCTGTGGGCCGACGAAGATGGCCTATGCCTGTTCGTCAA 766 Query 15551 ACGGCTGGAGCGTGGGCGCTTCGCCTGGCC 15580 || || ||||| || ||||||| |||||| Sbjct 767 GCGCCTTGAGCGCGGCCGCTTCGTCTGGCC 796 >seq439 Length=76666 Score = 242 bits (268), Expect = 1e-59 Identities = 412/597 (69%), Gaps = 0/597 (0%) Strand=Plus/Minus Query 5966 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 6025 ||| ||||| ||||| ||| |||| |||||| | ||| |||||| |||| || || Sbjct 70427 CCACTGCTCGCCAAAGGTAAAGCCAAGTTCAGCTAACGCCATATCCATTCTTTCTATAAA 70368 Query 6026 CTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAACCACGACATA 6085 ||| || || ||| ||||| | | ||||| || || || || |||| | ||| | Sbjct 70367 CTCTGGTACGGACTCTTCAAATTTTGAAATGTATTTATCGTCTCGTTCAATAATGACGTT 70308 Query 6086 ATGCAGTCCTTCACGCTTCATACGTGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 6145 || ||||||||||| ||||| || ||||||||||| ||||| | ||| || ||||| | Sbjct 70307 GTGAAGTCCTTCACGTTTCATTCGAGGGTCATAGTTAGCAAAATGCCATGCGTCTTTCCC 70248 Query 6146 TGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGAAACC 6205 || ||||||||||| |||| ||||| ||||| || |||| || ||| | || || || Sbjct 70247 CGTAACCCACATGCTAAACTGGACCTGAGCCATATATTCCGATTTGATGCCGTCAAAGCC 70188 Query 6206 ACCGAGCCGGAACTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGCTCAAGGCCATT 6265 | || | || || || || || || || ||||| || || || | ||||| || Sbjct 70187 ATTCAGTCTAAAATTAATAAAGTCGCGTGATGTAAATGGACACTTTAATTCAAGTCCCAG 70128 Query 6266 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTACGCATACTTTCGTCGCGATAGAT 6325 || ||||| || |||||||| ||||| || ||||||| ||||| | || Sbjct 70127 CCCATCACTACAGTCGCCATCGGGGGAGCACGCTACACGCATATCGTCGTCCTTGAATAT 70068 Query 6326 GATCGGGGATTCAGTAACATTCACGCCGGAAGTGAACTCAAACAGGGTTCTGGCGTCGTT 6385 ||| ||| || |||| | | || | ||||||||||||||| ||| || | | Sbjct 70067 GATGGGGACGTCGATAACGGTTAACCCTGTAGTGAACTCAAACAGTCGTCTTGCTACCTC 70008 Query 6386 CTCGTACTGTTTTCCCCAGGCCAGTGCTTTAGCGTTAACTTCCGGAGCCACACCGGTGCA 6445 |||| | ||||||||| | || | | || || ||||| |||| ||||| || Sbjct 70007 TTCGTTTTCTTTTCCCCATTCTAGCGGCCTTGCCTTCACTTCGGGAGATTGCCCGGTACA 69948 Query 6446 AACCTCGGCAAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGA 6505 || |||||||| ||| ||| |||||| ||| ||| | || | ||| || || ||||| Sbjct 69947 AATCTCGGCAATCAGCTTGTTGAAGTAAGACCGCTTCGTATCCGTCCATTTGTTGCCTGA 69888 Query 6506 GCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAA 6562 || || | | |||||| | | | ||||| ||||| ||| |||| || || || Sbjct 69887 ACGTGGGCTGGAAATCACGCAGGAAGCCTCTGAGGCGGTTATGGCGCCAAGGCGCAA 69831 Score = 82.4 bits (90), Expect = 3e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 21083 CTCATCCTCTGGACAGAACGCGGCGCAGCCCGTCACGCAAAAATGCTCGAAACCGATCGG 21142 ||||||||||||||||||||||| || || | || || || ||| | || || ||| Sbjct 38551 CTCATCCTCTGGACAGAACGCGGAGCCGCTTGACATGCCAAGATGTTTGAGACTGATAAA 38610 Query 21143 GCGTGGGAAGTGTTCGAAAAACTGGAAGACTGCTATTTCA 21182 || |||||||| ||||| |||||||||| || || |||| Sbjct 38611 GCATGGGAAGTATTCGAGCAACTGGAAGATTGTTACTTCA 38650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198741600927988