Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq53 163 2e-35 seq1 140 2e-28 seq308 138 8e-28 >seq53 Length=1361919 Score = 163 bits (180), Expect = 2e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| ||||| | || |||||||| | ||| || ||||| |||||||||||||| Sbjct 1239989 TGCCACCGCGCAAACGCAACACTAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCCG 1239930 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 |||| | | | ||||| |||||||| |||||| | ||||||||||| ||||| | Sbjct 1239929 AGAGAGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGG 1239870 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| |||||||| || || || ||| || |||| | ||| ||| | |||| Sbjct 1239869 GAATACCTTCCTTATCTTGGATCTTAGCTTTAACGTTTTCAACAGTGTCGGAAGGCTCTA 1239810 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || || ||||||||||| || |||| |||||| ||||||||||||||| Sbjct 1239809 CCTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAAAATTTGCATA 1239760 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | ||| || ||||| || ||||| || ||||| ||||| |||||| | Sbjct 1234462 CCACCACGCAGGCGTAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCGGAG 1234403 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| |||||||| |||||| | ||||||||||| ||||| ||| Sbjct 1234402 AGAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 1234343 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || || || ||| || |||| || |||||| | || || Sbjct 1234342 ATACCTTCCTTATCCTGGATCTTAGCTTTGACGTTTTCAATGGTATCGGAAGGCTCGACT 1234283 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||||||||| |||| |||||| || || ||||||||| Sbjct 1234282 TCCAAAGTGATGGTTTTACCGGTCAAAGTTTTGACGAAGATTTGCATA 1234235 Score = 145 bits (160), Expect = 5e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTC 15023 ||| |||||||| || || || |||||||| || || |||||| ||| | | | |||| Sbjct 1241775 TAAGACTAAATGGAGTGTTGATTCTTTTTGGATATTTTAATCGGACAGAGTGCGCCCGTC 1241716 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 ||| |||||||||||||| | |||||||||||||| ||| | ||| |||||||| || Sbjct 1241715 TTCCAATTGTTTGCCAGCAAAGATCAAACGCTGTTGATCGGGAGAAATACCTTCCTTATC 1241656 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 ||||| ||| || |||| |||||||| ||||| || || ||||| || Sbjct 1241655 TTGGATTTTTGCTTTAACCGTTTCGATAGTATCCGACGGCTCTACCTCCAAAGTAATAGT 1241596 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || |||| |||||| ||||| |||||||| Sbjct 1241595 TTTGCCAGTCAAAGTTTTAACAAAGATTTGCAT 1241563 Score = 138 bits (152), Expect = 8e-28 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || ||||| | ||| || ||||| | ||||| || |||||||| |||||||| | Sbjct 1232798 CCGCCACGCAAACGTAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCA--G 1232741 Query 15010 AGAATTCTCGC--GTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| ||||||||| ||||| |||||| | || ||||||||||| || || Sbjct 1232740 ACAATGTGCGCCCGTCTTCTAACTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGTG 1232681 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||||||||| || ||| || || ||| | || ||||||||| | || | Sbjct 1232680 GGATTCCTTCCTTATCTTGAATCTTAGCCTTAACATTCTCAATAGTATCGGAAGGCTCAA 1232621 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || ||||| || ||||| || |||| || || |||||||||||||| Sbjct 1232620 CCTCCAAGGTGATAGTTTTGCCAGTCAATGTCTTGACAAAAATTTGCAT 1232572 Score = 138 bits (152), Expect = 8e-28 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || ||||| | ||||| || ||||||| |||||||| ||| | | ||||| Sbjct 1240200 AACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCCGAAAGAGTGCGGCCGTCT 1240141 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 ||||||||||||||||| | ||||||||||| || || ||||| ||||| || || Sbjct 1240140 TCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTATCT 1240081 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATT-TTCTACGTCTAAGGTAATGGT 15143 |||||| ||| || |||| |||||||| | || |||||| || || |||||||| Sbjct 1240080 TGAATTTTTGCTTTAACGTTTTCGATAGTATC-CGATGGTTCTACTTCCAAAGTAATGGT 1240022 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || |||| |||||| ||||| || ||||| Sbjct 1240021 TTTTCCAGTCAAAGTTTTAACAAAGATCTGCAT 1239989 Score = 138 bits (152), Expect = 8e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| | || || ||||| ||||| |||||||| ||| | | |||||||| Sbjct 1241543 ACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCCGAAAGAGTGCGACCGTCTTCT 1241484 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||||||||||||| | ||||||||||| || || ||||| ||||| || || | Sbjct 1241483 AATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTATCTTGA 1241424 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| ||| || |||| |||||||| |||||| || || ||||||| ||| Sbjct 1241423 ATTTTTGCTTTAACGTTTTCGATAGTATCTGATGGTTCTACCTCCAAAGTAATGGATTTG 1241364 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| |||||||||||| |||||||| Sbjct 1241363 CCAGTCAAAGTTTTTACAAAGATTTGCAT 1241335 Score = 129 bits (142), Expect = 4e-25 Identities = 173/236 (73%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | || ||| || || | || || ||||||||||| |||||||| Sbjct 1232572 TGCCACCACGCAGACGTAGAACCAAGTGCAATGTTGATTCTTTTTGTATATTGTAATCA- 1232514 Query 15008 TGAGAATTCTCGCG--TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 || ||| ||| ||||| | |||||||||||| | ||||||||||| || ||| Sbjct 1232513 -GACAATGTGCGCCCATCTTCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGATCGGG 1232455 Query 15066 TGGAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTT 15124 ||||| ||||| ||||| || ||||| ||||||| |||| || ||||| || Sbjct 1232454 AGGAATACCTTCTTTGTCTTGGATCTTTGC-TTTTACATTTTCAATTGTATCAGATGGTT 1232396 Query 15125 CTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 | || ||||| || || ||||| || |||| || ||||| || |||||||| ||| Sbjct 1232395 CCACTTCTAAAGTGATTGTTTTGCCAGTCAATGTCTTTACGAAGATTTGCATTTTT 1232340 Score = 129 bits (142), Expect = 4e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || ||||| | || || ||||| ||||| ||||| || |||| | | ||||| Sbjct 1240428 AACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCGAGAGAGTACGACCGTCT 1240369 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | ||||||||||| | ||||||||||| ||||| ||||| ||||| || || Sbjct 1240368 TCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCTTTATCT 1240309 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATT-TTCTACGTCTAAGGTAATGGT 15143 |||||| || || |||| |||||||| | || |||||| || || |||||||| Sbjct 1240308 TGAATTTTTGCCTTAACGTTTTCGATAGTATC-CGATGGTTCTACCTCCAAAGTAATGGT 1240250 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || |||| |||||| ||||| |||||||| Sbjct 1240249 TTTGCCAGTCAAAGTTTTAACAAATATTTGCAT 1240217 Score = 120 bits (132), Expect = 2e-22 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||| | || || ||||| | ||||| || |||||||| |||||||| | Sbjct 1239759 CCACCACGCAAACGCAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCA--G 1239702 Query 15010 AGAATTCTCGC--GTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| |||||||| ||||| |||||| |||| ||||| ||||| || || Sbjct 1239701 ACAATGTGCGCCCGTCTTCTAGCTGTTTACCAGCGAATATTAAACGTTGTTGATCTGGTG 1239642 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||||||||| || ||| || ||| ||| | || ||||||||| | || | Sbjct 1239641 GGATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTCTCAATAGTATCGGAAGGCTCAA 1239582 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | || ||||| | ||||| || |||| || || || || || ||||| || Sbjct 1239581 CCTCCAAGGTGACAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTT 1239530 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || || || | || || ||||| || ||||| || |||||||||||||||||| | Sbjct 1234234 CCGCCACGTAAACGTAGGACCAAATGGAGAGTAGACTCCTTTTGTATGTTGTAATCGGAG 1234175 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTC 15062 ||| | | | ||||| |||||||| |||||| | ||||||||||| ||||| Sbjct 1234174 AGAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTC 1234122 >seq1 Length=10097680 Score = 140 bits (154), Expect = 2e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||||||| | | || ||||| | || || ||||| ||||| |||||||| Sbjct 7547615 CCACCTCGCAAACGAAGTACCAAATGCAATGTCGATTCTTTCTGTATATTGTAATCAGAC 7547556 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | | ||||| ||||||||||||||| | |||||||| || || || ||| Sbjct 7547555 AAAGTCCGCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGA 7547496 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || || ||||| ||||||| || ||| |||| ||||| ||| | || || Sbjct 7547495 ATGCCCTCTTTGTCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACT 7547436 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 || || ||||| ||||| || || |||||||| || ||||||||||| |||| Sbjct 7547435 TCCAAAGTAATTGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTTG 7547384 >seq308 Length=190705 Score = 138 bits (152), Expect = 8e-28 Identities = 171/232 (74%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||||||| | || || | ||| | || || |||||||| || || ||||| | Sbjct 86622 CCACCTCGCAAACGCAACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCC--G 86679 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || | ||||| |||||||| |||||| | ||||| || ||||||||| || Sbjct 86680 ATAATGTGCGACCATCTTCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTG 86739 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||||||| || ||||| ||| ||| ||| ||| |||| |||||||| || | Sbjct 86740 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGA 86799 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | || | |||||||| || || || || |||||||||||||| |||||||| Sbjct 86800 CCTCAAGAGTAATGGTCTTGCCCGTAAGGGTTTTTACAAAAATCTGCATATT 86851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357384808714535