Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_011589.1 Length=40287 Score E Sequences producing significant alignments: (Bits) Value seq552 118 3e-22 >seq552 Length=31981 Score = 118 bits (130), Expect = 3e-22 Identities = 200/286 (70%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 25067 GAGACGCTGACCGACATCCAGCGCGCAGCGCGGTTCTACTACCTGCAAAAGCTGGCATTC 25126 ||||| | ||||| ||||||||||| || || ||||| ||||||||||| | ||| ||| Sbjct 9766 GAGACCTTAACCGATATCCAGCGCGCGGCCCGTTTCTATTACCTGCAAAAACAGGCGTTC 9707 Query 25127 GGCGGCAAGGTGCAGGGGCAATCGTTCGGTGTGGTGACGGCTGGTGGGCCGCGATTGAAC 25186 |||||||||||| || ||| | || || ||| ||| | || ||| || ||||| Sbjct 9706 GGCGGCAAGGTGGCGGAGCACACCTTTGGCGTGACGACCACCACTGCGCCACGCCTGAAC 9647 Query 25187 CTTCTGCGCATTGAAGAGGAACTGAGCGCGGTGCATCTTCGCCTGGCAAACACCGTAATC 25246 || ||||||| ||||| |||||| || ||||| || | || |||| || Sbjct 9646 CTGTTGCGCATGGAAGAAGAACTGTCGTTGGCTCATCTGCGATTATCACGCACCACCATT 9587 Query 25247 GAGTGCCTGCCATGG--CAGGAGTGCGTGCGGCGCTACGATCGCCCGGGAACACTGTTCT 25304 || || ||| ||| || ||| ||||| || || ||| || ||||||| Sbjct 9586 GAACAACTTGATTGGGCCAGCTGT-ATTGC-TCGCTATGACCGTCCGCATACGCTGTTCT 9529 Query 25305 ACCTTGATCCGCCCTACTGGGAAACCGAGGGCTATGGCGTTGAGTT 25350 || ||||| || || |||| ||||||||||||||||| || || Sbjct 9528 ACTGCGATCCCCCGTATTGGGGCACCGAGGGCTATGGCGTCGATTT 9483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128794274858238