Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_011611.1 Length=36885 Score E Sequences producing significant alignments: (Bits) Value seq550 535 1e-147 >seq550 Length=29371 Score = 535 bits (592), Expect = 1e-147 Identities = 908/1312 (69%), Gaps = 32/1312 (2%) Strand=Plus/Minus Query 14158 CCCGGACGGCCAGCACGAAGCCATTGCGGCGCCGCGTGGTAATGCCAAGTCCACCCTGGT 14217 |||| | ||| |||| || |||||||| ||||||||||| | |||||||| || ||||| Sbjct 17434 CCCGAAAGGCGAGCAGGACGCCATTGCCGCGCCGCGTGGGGAGGCCAAGTCAACGCTGGT 17375 Query 14218 GAGCCAGATATTCGTGATCTGGTGCGTACTCACCGGCCGCAAGCATTACCCCCTGATCAT 14277 |||||| | || ||| | ||||| | | |||| |||||| || | ||| | | Sbjct 17374 CAGCCAGCTGTTTGTGCTGTGGTGTCTGGTGCGCGGCATCAAGCACTATGCGCTGGTAGT 17315 Query 14278 CATGGATGCCTTCGAACAGGCCGCCACGATGCTGGAAGCGATCAAGGCGGAGCTGGAGTT 14337 |||||| || |||| |||||| | ||||||| ||||| |||||||| |||||||| || Sbjct 17314 GATGGATTCCATCGACCAGGCCTACCCGATGCTCGAAGCCATCAAGGCCGAGCTGGAATT 17255 Query 14338 CAACCCGCGCCTGGCCACCGACTTCCCCCAGGGCGCCGGCAAGGGCCGCGTCTGGCAGGT 14397 ||||| || ||| | ||||||||| | | | ||| ||||||||||||||| | Sbjct 17254 TAACCCCCGGCTGCTGGCTGACTTCCCCGAAGCCTGCGGGGTAGGCCGCGTCTGGCAGAT 17195 Query 14398 CGGCACCATCGTTACGGCGAACGATGC-CAAGGTCCAGGTCTTCGGCTCCGGCAAGCGGA 14456 ||||||||| | ||| |||||| |||||| ||||| ||| ||| || | Sbjct 17194 GGGCACCATCCTGACGCGCAACGATATGCAAGGTGCAGGTGGCCGGTAGCGGTAAAAAGC 17135 Query 14457 TGCGCGGCCTTCGACACGGCCCGCACCGTCCTGACCTGGTGATCGGCGACGACCTGGAGA 14516 |||||||||| || ||||| ||| |||| |||||||||||||| ||||| | |||| Sbjct 17134 TGCGCGGCCTGCGCCACGGGCCGTACCGCCCTGACCTGGTGATACTGGACGATATTGAGA 17075 Query 14517 ACGACGAGAACGTCCGCAGCCCGGAGCAACGCGACAAGCTGGAAAACTGGCTGAAAAAGA 14576 |||||||| | || |||| |||||| || |||||||| ||||||| |||||||| ||| | Sbjct 17074 ACGACGAGCAGGTGCGCAACCCGGACCAGCGCGACAAACTGGAAAGCTGGCTGAGAAAAA 17015 Query 14577 CTGTGCTGTCCCTCGGCTCCGCCGACGACACCATGGACNNNNNNNNNNNNNNNNNNNNNN 14636 | |||||| | || ||| || | || | | || Sbjct 17014 CCGTGCTGCCGCTGGGCGGTGCGGGCGCAAAACTCGATGTGGTCTATATCGGCACCATCC 16955 Query 14637 NNNNNTACGACTCGGTCCTGTCGCGCCTGCTGAAAAACCCTCTGTGGAAGCGGCGCAAGT 14696 |||||||||||| | || ||| ||||| ||||| ||||| | | ||| | Sbjct 16954 TGCATTACGACTCGGTCTTATCACGCACCCTGAATAACCCATTGTGGCGACAG-GCACGG 16896 Query 14697 -TCAAGGCGATCATCGAATGGCCGCACCGCATGGACCTGTGGGAGAAGTGGGAGGAACTG 14755 | ||||| | | | |||||| | || |||||||||| |||||| | | Sbjct 16895 CTTAAGGCCCTGCGCCAGTGGCCGGTGAACCTGTCGCTGTGGGAGACCTGGGAGCAGCGC 16836 Query 14756 CTGCTCAACTCCGACGACGAGGGCGCCGCCGCTCTGGCCTTCTAC--CAGGAACGCGCCG 14813 ||| ||| || | || | ||| || | ||| || ||| | || || ||| | Sbjct 16835 TTGCGTAAC------GAGGGGGAGGACGCGGCGCAGGCATTTTACACCCGGCAC-CGC-G 16784 Query 14814 CCGCCATGGAGGACGGCGCGATCATCTGCTGGCCGGATGGGCAGCCCCTTTACAAACTCA 14873 | ||||| || |||||| ||| |||| | | | | || || | || | Sbjct 16783 TGGAAATGGAAGATGGCGCGGAGGTCTCCTGGTCCGCCCGCCCGCTGCTGACC---CTGA 16727 Query 14874 TGGTGAAGCGTGCCCGCGATGGGCACTCGGCGTTCGACTCGGAACAACAGAACGACCCTG 14933 || | || ||||| || || ||| | | || || | || | ||||| ||||| | Sbjct 16726 TGCATATCCGCGCCCGTGACGGTCACGCCACCTTTGATGCCGAGTACCAGAATGACCCGG 16667 Query 14934 TCCAGGGCGAGAACGCCCCCTTCGCC----GCCTGCATCACGTTCTGGGTCAACCGCCTG 14989 || || || | || | || ||| |||||||| |||||||||||||| || Sbjct 16666 TCAGCGGTGAAGATGCGCTGTTTGCCCACTGCCTGCAT----TTCTGGGTCAACCGGCTT 16611 Query 14990 GCGCAGTGGATGTTCTACGGCGCGTGCGACCCGTCCCTGGGTAAGCAAGGCTCCAGTCGC 15049 ||||| | ||||| || || |||||||| ||| || ||| || |||| || Sbjct 16610 AACGAGTGGGTCTTCTATGGGGCCTGCGACCCCAGCCTCGGCAAGGCCGGGGCCAGCCGT 16551 Query 15050 GACCC--CAGTGCCATCCTGGTGGGTGGGTTCAACCGGGAGACAGGCGTCCTGGACGTGG 15107 ||||| ||| || | ||||| ||||| || || || | || ||||| ||||| |||| Sbjct 16550 GACCCGTCAGCGC--TGCTGGTCGGTGGCTTTAATCGCGCCACCGGCGTGCTGGATGTGG 16493 Query 15108 TCGAGGCCGCCATCCGCAAGCGCCTGCCGGACAAGATCATCGAGGACATCATCGCCATGC 15167 | || || || |||||||| ||||||||| || ||| | || || || ||| Sbjct 16492 TGGAAGCGCAGATACGCAAGCGGCTGCCGGACGCCATTATCAGCAATATTATTGCTCTGC 16433 Query 15168 AACGGGCCTATCACTGCCTGGTGTGGGGTGTCGAGGCGGTCCAGTTCCAGGAGTTCCTGC 15227 || || |||||||||||||| ||||| | |||||||| ||||| ||||||||||||| Sbjct 16432 AAAAGGAATATCACTGCCTGGTCTGGGGCATTGAGGCGGTGCAGTTTCAGGAGTTCCTGC 16373 Query 15228 GCACCGAGCTGGTGAAGCGCTCGGCCAAGGCTGGCTGCCCAGTACCTGCCCGAGCGATCA 15287 ||||||||||| | |||||| |||| || ||| ||| || || || || || || | Sbjct 16372 GCACCGAGCTGATTAAGCGCGCGGCTCAGCTGGGCCACCCGGTGCCGGCGCGGGCCATTA 16313 Query 15288 CGCCACACGCCGACAAGCTACTGCGAATCGAAAGCCTCCAGCCGCACATGGCCAACGGCC 15347 || || ||||||||||| |||| ||||| | ||| ||||| || |||| ||||| | Sbjct 16312 TCCCCCATGCCGACAAGCTGTTGCGTATCGAGACCCTGCAGCCCCATATGGAAAACGGGC 16253 Query 15348 TAATCCGTCTGCACCCCAGCCAGACCGTCCTGGAACAACAGCTGCGCCA--CTTCCCGGC 15405 | ||||| |||||| ||||||||||| |||| ||| ||||||||||| |||||| Sbjct 16252 TTATCCGGCTGCACGCCAGCCAGACCACCCTGATACAGCAGCTGCGCCATTTTTCCCG-- 16195 Query 15406 CGCAGACCACGACGATGGCCCCGACGCCCTGCACATGCTCTGGATGCTGGCC 15457 ||| ||||| ||||| ||||| ||||| ||||| |||||||||| | ||||| Sbjct 16194 CGCCGACCATGACGACGGCCCGGACGCGCTGCATATGCTCTGGACGTTGGCC 16143 Score = 104 bits (114), Expect = 6e-18 Identities = 161/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 17496 CCGCCTGGATACCATCTACCAGACCAACATGCAGTCGGCCTACATGGCAGGGCGCTAC-- 17553 ||| ||||| || || | | ||||| | ||||| ||||| ||||| |||||||| Sbjct 14245 CCGGCTGGAGACGATTTTTCGCACCAATACCCAGTCTGCCTATATGGCCGGGCGCTATCA 14186 Query 17554 GCGGCCGCCTACGAAGCCAGGGAAACCCACCCTTACTGGATGTATGTGGCGGTGATGGAT 17613 ||||| || ||| | || | || |||||| |||||||||||||||||| Sbjct 14185 GCGGCTGCGCGAGAA--CGTCGACCAGCGGCCCTACTGGCAGTATGTGGCGGTGATGGAC 14128 Query 17614 GGCGTTACCCGGCCCAGCCATGCCGCCCTGCATGGGAAAGTGTTCAGGTGGGACGATCCG 17673 || ||||| |||||||||||||| |||||||| |||||| | | |||||| || Sbjct 14127 AGCCACACCCGCCCCAGCCATGCCGCGCTGCATGGCCGGGTGTTCCGTTATGACGATGCG 14068 Query 17674 ATCTGGCAGCACATCACCCCGCCCAATGGCTACAACTGCCGGTGCCGG 17721 |||| | | | || || || |||||||||||||| |||||| Sbjct 14067 GGCTGGGATACCCTGTTTCCCCCGAACGGCTACAACTGCCGCTGCCGG 14020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117908088292914