Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_011613.1 Length=36632 Score E Sequences producing significant alignments: (Bits) Value seq550 138 3e-28 >seq550 Length=29371 Score = 138 bits (152), Expect = 3e-28 Identities = 168/227 (74%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 16450 CCGGCTGGAAACGATCTACCAGACCAACATGCAGTCGGCCTACATGGCCGGGCGCTAT-- 16507 ||||||||| ||||| | | ||||| | ||||| ||||| ||||||||||||||| Sbjct 14245 CCGGCTGGAGACGATTTTTCGCACCAATACCCAGTCTGCCTATATGGCCGGGCGCTATCA 14186 Query 16508 GCCGCCGCATACGAGGCCAGGGAAACTCACCCTTACTGGATGTATGTGGCCGTCATGGAC 16567 || || || |||| | || | || |||||| ||||||||| || |||||| Sbjct 14185 GCGGCTGCG--CGAGAACGTCGACCAGCGGCCCTACTGGCAGTATGTGGCGGTGATGGAC 14128 Query 16568 AGCGTCACCCGGCCCAGCCATGCGGCGCTACATGGCAAGGTGTTCCGCTGGGACGACCCG 16627 ||| |||||| ||||||||||| ||||| |||||| ||||||||| | ||||| || Sbjct 14127 AGCCACACCCGCCCCAGCCATGCCGCGCTGCATGGCCGGGTGTTCCGTTATGACGATGCG 14068 Query 16628 ATCTGGCAGCACATCATGCCGCCGAATGGCTACAACTGCCGGTGCCG 16674 |||| | | | | || ||||| |||||||||||||| ||||| Sbjct 14067 GGCTGGGATACCCTGTTTCCCCCGAACGGCTACAACTGCCGCTGCCG 14021 Score = 82.4 bits (90), Expect = 2e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 14666 CATCTTGATCGAGGCCGAGCAGGGTCAACTCCAGGCTCAGGCCGAGCTGTTCATGGACAT 14725 |||| ||| ||||||||||||||| || || | ||||| || ||||| | || || Sbjct 15912 CATCCTGAGCGAGGCCGAGCAGGGGCACCTGGTGCGCCAGGCTGACCTGTTTTTTGATAT 15853 Query 14726 GGAGGAACGCGACGCCCACCTATTCGCAGAAATGAGCAAGCGC 14768 |||||| ||||||| ||| || || || || |||||||||||| Sbjct 15852 GGAGGAGCGCGACGGCCATCTTTTTGCCGAGATGAGCAAGCGC 15810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117098504165628