Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq308 141 9e-29 seq1 134 1e-26 seq53 123 2e-23 seq260 91.5 1e-13 >seq308 Length=190705 Score = 141 bits (156), Expect = 9e-29 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 126883 TGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATC 126942 ||| ||||| || || |||||||| | ||||| ||| || |||||||||||||| ||||| Sbjct 86618 TGCACCACCTCGCAAACGCAACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATC 86677 Query 126943 GCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGG 127002 | |||||| ||| || | |||||||||||| |||||||||| || || ||||| Sbjct 86678 CGATAATGTGCGACCATCTTCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGG 86737 Query 127003 AGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCT 127061 || || ||||| |||||| ||| | | || || | | ||| | || || | || Sbjct 86738 TGGAATTCCCTCTTTGTCC-TGAATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCT 86796 Query 127062 CGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || | || ||||| || || |||||||||||||||||||| Sbjct 86797 CGACCTCAAGAGTAATGGTCTTGCCCGTAAGGGTTTTTACAAAAATCTGCAT 86848 >seq1 Length=10097680 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || || || | |||||||| | || || ||||| || ||||||||||| | Sbjct 7547615 CCACCTCGCAAACGAAGTACCAAATGCAATGTCGATTCTTTCTGTATATTGTAATCAGAC 7547556 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | ||||| |||||| ||||||| || |||||||| ||||| Sbjct 7547555 AAAGTCCGCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGA 7547496 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||| |||||| ||||| ||||| | ||| | ||||| | | ||| ||| Sbjct 7547495 ATGCCCTCTTTGTCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACT 7547436 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | |||||||| || |||||||| || ||||| ||||| Sbjct 7547435 TCCAAAGTAATTGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 7547389 >seq53 Length=1361919 Score = 123 bits (136), Expect = 2e-23 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | |||||||||||||| | ||||| || ||||| | ||||||||| Sbjct 1240216 TCCACCACGGAGACGCAACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCCGA 1240157 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| || |||| ||||| ||||| | ||||| ||||||||||| ||||| Sbjct 1240156 AAGAGTGCGGCCGTCTTCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTGGAGG 1240097 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || || | | ||| ||| ||||| | ||| ||||| || |||| || Sbjct 1240096 AATACCTTCTTTAT-CTTGAATTTTTGCTTTAACGTT-TTCGATAGTATCCGATGGTTCT 1240039 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||| | || | ||||| || |||| |||||| ||||| ||||||||| Sbjct 1240038 ACTTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTAACAAAGATCTGCATG 1239988 Score = 122 bits (134), Expect = 8e-23 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | |||| ||||||||| | || || ||||| || ||||||||||| Sbjct 1241562 TCCACCGCGGAGACGCAGCACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCCGA 1241503 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | |||||| || |||| ||||| ||||| ||||||| ||||||||||| ||||| Sbjct 1241502 AAGAGTGCGACCGTCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGG 1241443 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || || | | ||| ||| ||||| | ||| ||||| || || | || Sbjct 1241442 AATACCTTCTTTAT-CTTGAATTTTTGCTTTAACGTT-TTCGATAGTATCTGATGGTTCT 1241385 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || | | |||||| |||| |||||||||||| || ||||| Sbjct 1241384 ACCTCCAAAGTAATGGATTTGCCAGTCAAAGTTTTTACAAAGATTTGCAT 1241335 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | |||||||||||||| | || || ||||| || |||||||| || Sbjct 1240444 TCCACCGCGGAGACGCAACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCGA 1240385 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || ||| || || |||||||| ||||| ||||||| |||||||| || ||||| Sbjct 1240384 GAGAGTACGACCGTCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 1240325 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || || || | | ||| ||| || ||| | | ||||| || |||| || | Sbjct 1240324 AATACCTTCTTTAT-CTTGAATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTTCTA 1240266 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || | |||||||| |||| |||||| ||||| || ||||| Sbjct 1240265 CCTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAATATTTGCAT 1240217 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || || || || |||||||| | |||||| || ||||| ||||||||||| | Sbjct 1232798 CCGCCACGCAAACGTAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGAC 1232739 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || |||| |||||| |||||| |||| || ||||| ||||| || || Sbjct 1232738 AATGTGCGCCCGTCTTCTAACTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGTGGG 1232679 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| || || || ||| | | || | || || | | ||| || Sbjct 1232678 ATTCCTTCCTTATCTTGAATCTTAGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACC 1232619 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | |||||||| |||| || || |||||||| |||||| Sbjct 1232618 TCCAAGGTGATAGTTTTGCCAGTCAATGTCTTGACAAAAATTTGCATG 1232571 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || || ||||| |||||||| | |||||| || ||||| ||||||||||| | Sbjct 1239759 CCACCACGCAAACGCAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGAC 1239700 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || ||||||||||| |||||| | || || || || ||||| || || Sbjct 1239699 AATGTGCGCCCGTCTTCTAGCTGTTTACCAGCGAATATTAAACGTTGTTGATCTGGTGGG 1239640 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| | | ||| | | || || | | || | || || | | ||| || Sbjct 1239639 ATTCCTTCCTTAT-CTTGAATCTTAGCTTTAACATTCTCAATAGTATCGGAAGGCTCAAC 1239581 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| || ||||| || |||| || || || || |||||||| Sbjct 1239580 CTCCAAGGTGACAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 1239533 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || || |||||||| ||||||||||| | Sbjct 1232570 CCACCACGCAGACGTAGAACCAAGTGCAATGTTGATTCTTTTTGTATATTGTAATCAGAC 1232511 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || ||||| ||||| ||||||| ||||||||||||||||| Sbjct 1232510 AATGTGCGCCCATCTTCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGA 1232451 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || ||||| ||| || ||| || | | ||| | || || | || || Sbjct 1232450 ATACCTTCTTTGTCTTGGATCTT-TGCTTTTACATTTTCAATTGTATCAGATGGTTCCAC 1232392 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | |||||||| |||| || ||||| || || ||||| Sbjct 1232391 TTCTAAAGTGATTGTTTTGCCAGTCAATGTCTTTACGAAGATTTGCAT 1232344 >seq260 Length=279278 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||| |||| || |||||||||||||| | |||||| | ||||| ||||||||||| | | Sbjct 75200 CCATCGCGCAAACGCAACACCAAATGAAACGTAGATTTCTTTTGTATATTGTAATCACAC 75141 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || |||| || ||| |||||| ||||||| || | |||| | ||| Sbjct 75140 AATGTGCGCCCGTCTTCTACCTTTTTACCAGCGAAGATCAAACGTTATTGATGGTGAG-- 75083 Query 127007 ATGCCCTCCTTGTC 127020 || || ||||| || Sbjct 75082 ATTCCTTCCTTATC 75069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475490986852240