Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_011802.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq556 369 1e-97 seq439 192 2e-44 >seq556 Length=23517 Score = 369 bits (408), Expect = 1e-97 Identities = 991/1496 (66%), Gaps = 36/1496 (2%) Strand=Plus/Minus Query 31960 AATGCCGATTCAACAACTCCCCATGATGAAGGGAATGGGTAAAGACTTCAAGAATGCCGA 32019 |||| |||| ||| | ||| |||| || || | ||||||| | | | ||||| Sbjct 8531 AATGGCGATAATGCAATTACCCCTGATAAAAGGTCTCGGTAAAGCGCGCGATGACGCCGA 8472 Query 32020 CTACATTGATTACCTACCAATCAATATGTTGGCCACACCGAAAGAAGTCCTCAACTCATC 32079 || || || | | || |||||||| |||| || || || || | || | Sbjct 8471 TTATATCGACGCCTTGCCGGTCAATATGCTGGCTACGCCCAAGCCGGTATTGAATGCCAG 8412 Query 32080 GGGTTATTTACGCTCATTCCCCGGCATAGCGAAGCGAAAC-GATGTAAATGGTATATCGC 32138 |||||| ||||||| || ||||| || || || || | || || || | || | Sbjct 8411 CGGTTATCTACGCTCGTTTCCCGGTATTGCCC-GCAAAGCAGAGGTCGCCGGGGTGTCCC 8353 Query 32139 GTGGTGTTGAATACAACACCGCTCAGAACGCTGTATATCGCGTTTTAGGCAGTAAGCTCT 32198 | || ||| | ||||| ||| | | || | || ||||||| | || | | | | | Sbjct 8352 GAGGCGTTCAGTACAATACCCATGAAAAGACGGTTTATCGCGGGCTGGGAAATCAATTAT 8293 Query 32199 ACAAAGGGGA--AACCGTAGTAGGTGATGTAGCCGGAAGCGGTCGCGTATCA--ATGGCA 32254 ||||||| | ||||| ||| ||| | || |||| |||||| |||| ||||| Sbjct 8292 ACAAAGGCCATAAACCGA--TAGCGGATATTGCTGGAAAGGGTCGC--ATCAGCATGGCG 8237 Query 32255 CATGGTCGCACATCACAGGCGGTAG--GCGTTAATGGTCAACTGGTCGAGTATCGCTATG 32312 | | |||| |||||||||| ||| | || || || || || || | Sbjct 8236 TTTAGCCGCAACAGTCAGGCGGTAGCAGCGGCA--GGAAAAATGACGCTCTACCGTTACG 8179 Query 32313 ATGGCACGGTTAAAACCGTCTCAAACTGGACTGCAGACAGCGGATTCACGCAGTATGAGT 32372 |||||||||| ||||| | ||||||| | ||||| || |||||| || || Sbjct 8178 ATGGCACGGTAAAAACACTGGAAAACTGGCCGAAAGACAAAAAATACACGCAATACGATA 8119 Query 32373 TAGGCTCAGTCCGTGACATTACGCGCTTACGTGGGCGTTATGCGTGGTCAAAAGACGGCA 32432 | || | || || || || | || || || ||||||| |||| |||||||||| Sbjct 8118 TTGGTACCGTGCGGGATATGTGCCATTTGCGCGGACGTTATGTCTGGTGTAAAGACGGCA 8059 Query 32433 CTGATTCATGGTT--TATCACTGACCTCGAAGATGAGTCGCATCCTGACCGCTACAGTGC 32490 | ||| || || | |||| || | |||||||| || || |||||||||||| | || Sbjct 8058 CCGAT--ATTTTTGGTGTCACCGATTTGGAAGATGAATCTCACCCTGACCGCTACCGCGC 8001 Query 32491 AGAATATCGCGCAGAATCGCAGCCAGACGGCATCATTGGCATCGGAACGTGGCGAGACTT 32550 |||||||| ||||| || || |||||||| || || || | | ||||| || || Sbjct 8000 GCTGTATCGCGCCGAATCACAACCCGACGGCATTATCGGTATTGATAGCTGGCGCGATTT 7941 Query 32551 TATCGTTTGCTTTGGTTCATCGACGATAGAGTATTTCTCCCTGACAGGCGCAACCACCGT 32610 ||| || |||||||| | || || || || ||||| |||||||| || || || || Sbjct 7940 TATTGTCTGCTTTGGCGCGTCCACCATTGAATATTTTTCCCTGACCGGGGCGGCCGACG- 7882 Query 32611 TGGCGCTGCGT--TGTATGTCGCGCACGCATCGTTAATGGTACAGAAGGGCATTGCCGGA 32668 ||| | || | |||| ||| || | | | ||||| |||| ||||||||||| Sbjct 7881 -GGCAATCCGCCATCTATGCCGCACAGCCTGCACTCATGGTCGAGAAAGGCATTGCCGGG 7823 Query 32669 ACATACTGTAAAACGCCATTCGCTGATTCATATGCATTCATCAGTCACCCAGCTACTGGC 32728 || |||| || || | ||| ||| | ||| ||||||| || | || || ||| Sbjct 7822 ACCCACTGCAAGACCCGGCTCGGCGATGCTCATGTGATCATCAGCCATCAGGCCACCGGC 7763 Query 32729 GCACCTTCCGTCTACATCATCGGGTCAGG-GCAGGCTTCACCAATTGCGACGGCCAGTAT 32787 || || || || ||| | || ||||| |||||| || | ||||| ||||||| || Sbjct 7762 GCGCCGTCGGTATACCTGATTAA-TCAGGCGCAGGCGACATCGATTGCCACGGCCACCAT 7704 Query 32788 TGAGAAAATTATCCGCTCATACACGGCTGATGAACTGGCAACCGGGGTGATGGAGGCGTT 32847 ||||||||| | ||| ||||| ||||||||||| | || || ||||| | | Sbjct 7703 CGAGAAAATTCTACGCAGCTACACACACGATGAACTGGCGAGCGCCGTCATGGAAACCGT 7644 Query 32848 GAGGCTCGATTCGCATGAACTGCTGATTATCCATCTCCCGCGTCATGTGCTGGTTTACGA 32907 | |||| || ||| | || |||||||| | ||||| || ||| || ||| || Sbjct 7643 CCGTTTCGACAGCCACGAATTAGTGCTTATCCATTTGCCGCGACAGGTGTTGTGTTATGA 7584 Query 32908 TGCCTCATCAAGCCAGAACGGGCCGCAATGGTGCGTACTGAAAACAGGTTTATACGACGA 32967 ||| | | | ||||||||||||||||||| || | |||||||| || || || ||| Sbjct 7583 CGCCGCGGCCAACCAGAACGGGCCGCAATGGAGCCTGCTGAAAACGGGCTTTTATCACGC 7524 Query 32968 TGTTTATCGCGCCATCGACTTCATGTACGAAGGCAACCAGATAACGTGCGGCGATAAATC 33027 | ||||||| |||||| || |||| | | | | || | || || ||||||||| Sbjct 7523 TCCCTATCGCGGCATCGATTTTATGTTTGCCGACCATCACCTCACCTGTGGCGATAAACA 7464 Query 33028 AGAAGCAGTGACAGGGCAGTTGCAATTCGACAT-TAGTAGTCAGTACGACAAGCAGCAAG 33086 || || | || || | | || | ||| | | || || || || | ||| | Sbjct 7463 CGATGCCCTCCTCGGCCAACTTGATTTTG-CATCTTCTGCGCAATATGAAAAACCGCAGG 7405 Query 33087 AACATCTGCTGTTTACTCCCATCTTCAAGGCTGATAACGCCAGATGCTTCGATCTGGAAG 33146 | ||| | || | ||| || | |||||||| ||||| ||| | || ||| | ||| Sbjct 7404 AGCATGTTCTCTATACCCCGCTTTTCAAGGCAGATAATGCCCGCGTATTTGATTTTGAAC 7345 Query 33147 TTGAATCCTCGACAGGCGTTGCGCAGTACGCTGACCGCCTGTTCCTGTCTGCAACCACAG 33206 | || | || || ||||| ||||| ||| |||||||| ||||| || || ||| | | Sbjct 7344 TGGAGGCATCAACCGGCGTGGCGCACATCGCCGACCGCCTCTTCCTCTCCGCCACCGCCG 7285 Query 33207 ACGGAATCAACTATGGTCGAGAGCAGATGATTGAACAAAATGAGCCGTTTGTGTACGACA 33266 |||| || | | ||| || || ||||||||| | ||||||| |||||||| ||| ||| Sbjct 7284 ACGGCATGCATTTTGGCCGCGAACAGATGATTAACCAAAATGCGCCGTTTGCGTATGACC 7225 Query 33267 AGCGTGTTATCTGGAAACGTGTTGGGCGCATTCGTCGATTAATCGGATTCAAACTGCGTG 33326 |||| || ||||| || ||||| ||| | | |||| || ||| | || | Sbjct 7224 AGCGAATTCTCTGGCGGCGGGTTGGCTACATCAGAAAAAATGTCGGCTTTAAAGTACGGG 7165 Query 33327 TAATCACCAAATCACCAGTAACACTATCCGGGTGTCAAATTCGTCTGGAGTAAAATATGG 33386 | |||||| ||| || || || || ||||| ||||| || | |||| || |||| Sbjct 7164 TGATCACCTCATCGCCCGTGACGCTCTCCGGTTGTCAGATAAGGATGGAATA----ATGG 7109 Query 33387 CA---GATCCGTCACTTAATAATCCTGTCATTATTCAGGCCACCCGTCTTGATGCC 33439 || ||| || || |||||||| || || || |||| || |||||| || Sbjct 7108 CAAACGATACGCCA---AATAATCCCGTGGAAATACACACCACGCGCCTTGATACC 7056 Score = 178 bits (196), Expect = 3e-40 Identities = 271/386 (70%), Gaps = 0/386 (0%) Strand=Plus/Minus Query 36100 GCTGACAGACAGGCCGCCGCTCAGGGAGCTGTTGATACGTTCAGCACTGCGCTTGATTCT 36159 |||||||| ||||| |||| ||| ||||| |||||||| | || || || | ||| Sbjct 4680 GCTGACAGGCAGGCGATGGCTCGGGGGGCTGTCGATACGTTTAATACCGCACTGCAATCT 4621 Query 36160 CTCAACGAGATAGAGCAAAGCCCCGGTCTTTCAAAAGCAGTAGGCATTCGCTCAGCGTTT 36219 || || | ||| |||||| || | |||||||| || || ||| ||| Sbjct 4620 CTTTCAGAACTGGAGGCAAGCCCTGGATTGTCAAAAGCCGTTAGCTACAAATCATTATTT 4561 Query 36220 CCGACAGTTCCTGGCTCTGATGCGGCTAACTTTGAAGCAAGACTCGACACCTTTAAAGCT 36279 |||||| | || ||| ||| || || ||||||||||| | || || || || || ||| Sbjct 4560 CCGACATTCCCCGGCAGTGACGCAGCAAACTTTGAAGCGCGCCTGGATACATTCAAGGCT 4501 Query 36280 CAAACTTTCCTTCCTATGGTGCAGTCACTGAAGGGGATGGGCGCTCTTTCAGATGCTGAG 36339 || || ||||| || |||||||||||| ||||||| ||||| || || || || || || Sbjct 4500 CAGACATTCCTGCCCATGGTGCAGTCAATGAAGGGCATGGGTGCCCTGTCTGACGCGGAA 4441 Query 36340 GGTAAAAAATTATCCGATGCGGTTGGTGCCCTAAGCCCCAAAATGAGTGAAAAGGCTTTT 36399 || ||||| | |||||||||| || || || | ||||||||||||||| ||| || Sbjct 4440 GGCAAAAAGCTCACCGATGCGGTGGGCGCGCTCAATCCCAAAATGAGTGAATCGGCGTTC 4381 Query 36400 CGTGAATCTATCGGAAAGATTAGAAATCAGCTTGAAAGCAAGTTGAGCACTGTTAAAAAA 36459 | | ||| || ||| || | |||||||| |||| || | ||||||| Sbjct 4380 AGGGCATCCATGGGACGCATCCGCCGCGAGCTTGAAGGCAAATTACACGCTGTTAAGCGT 4321 Query 36460 CAGTTTGATTATCAGGAGCCGGTGCA 36485 || ||||||||||| || || | ||| Sbjct 4320 CAATTTGATTATCAAGATCCCGCGCA 4295 >seq439 Length=76666 Score = 192 bits (212), Expect = 2e-44 Identities = 202/266 (76%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 16500 GTTGGCATGATTCTGGTCGATTACCTGACACTAATGACCGCTGAAAAGGCCGATCGTAAC 16559 || || ||| | ||||||||||||||||| || ||| || || || ||||| || ||| Sbjct 61304 GTAGGTATGGTGCTGGTCGATTACCTGACGCTTATGCGGGCAGAGAAAGCCGACCGCAAC 61245 Query 16560 GACCTTGCTTACGGCATGATTACTAAGGGACTGAAGAACCTTTCCAAAGAGCTTGATTGC 16619 ||| | || ||||| || || || |||||||| ||||||||| |||| |||||||||||| Sbjct 61244 GACTTGGCGTACGGGATTATAACCAAGGGACTCAAGAACCTTGCCAAGGAGCTTGATTGC 61185 Query 16620 GTTGTTGTGCTTCTGACGCAGCTTAACCGCGCACTGGAAAGCCGAACCAATAAACGCCCA 16679 |||| ||||| || || ||| | ||||||| || || | || || |||||||| Sbjct 61184 ATTGTGGTGCTGCTAACACAGTTAAACCGCGACCTTGAGAAACGTGTTAACAAACGCCCC 61125 Query 16680 TTACCAAGCGACTCCCGAGATACAGGGCAGATTGAACAGGATTGCGATTATTGGGTTGGT 16739 ||||| ||| | ||||||| || ||||||||||| || || ||||| ||| | || Sbjct 61124 CAGCCAAGTGACAGCAGAGATACTGGCCAGATTGAACAAGACTGTGATTACTGGCTGGGG 61065 Query 16740 ATCCATCGTGAAGGTGCTTTTGATGA 16765 ||| | || |||||||||| ||| || Sbjct 61064 ATCTACCGGGAAGGTGCTTATGACGA 61039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134086971089586