Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_011976.1 Length=43016 Score E Sequences producing significant alignments: (Bits) Value seq556 372 8e-99 seq724 125 2e-24 >seq556 Length=23517 Score = 372 bits (412), Expect = 8e-99 Identities = 778/1147 (68%), Gaps = 24/1147 (2%) Strand=Plus/Minus Query 7747 TATCGCTATGATGGCGCGGTTAAAACCGTCTCAAACTGGCCTGCAGACAGCGGATTCACG 7806 || || || |||||| |||| ||||| | ||||||||| ||||| || |||| Sbjct 8188 TACCGTTACGATGGCACGGTAAAAACACTGGAAAACTGGCCGAAAGACAAAAAATACACG 8129 Query 7807 CAGTATGAGTTAGGCTCAGTCCGTGACATTACTCGCTTACGTGGGCGTTATGCATGGTCA 7866 || || || | || | || || || || | || || || ||||||| |||| Sbjct 8128 CAATACGATATTGGTACCGTGCGGGATATGTGCCATTTGCGCGGACGTTATGTCTGGTGT 8069 Query 7867 AAAGACGGTACAGATTCATGGTT--TATCACTGACCTTGAAGATGAATCGCATCCTGACC 7924 |||||||| || ||| || || | |||| || | ||||||||||| || ||||||| Sbjct 8068 AAAGACGGCACCGAT--ATTTTTGGTGTCACCGATTTGGAAGATGAATCTCACCCTGACC 8011 Query 7925 GCTACAGTGCAGAATATCGCGCAGAATCGCAGCCTGACGGGATAATTGGCATAGGTTCAT 7984 ||||| | || |||||||| ||||| || || ||||| || || || || | | | Sbjct 8010 GCTACCGCGCGCTGTATCGCGCCGAATCACAACCCGACGGCATTATCGGTATTGATAGCT 7951 Query 7985 GGCGAGATTTCATCGTCTGCTTTGGCTCGTCGACGATAGAGTATTTCTCCCTGACAGGCG 8044 |||| ||||| || |||||||||||| |||| || || || ||||| |||||||| || | Sbjct 7950 GGCGCGATTTTATTGTCTGCTTTGGCGCGTCCACCATTGAATATTTTTCCCTGACCGGGG 7891 Query 8045 CAACCACCGTTGGCGCTGCGT--TGTATGTCGCGCAGCCATCGTTAATGGTACAGAAGGG 8102 | || || ||| | || | |||| ||| ||||| | | ||||| |||| || Sbjct 7890 CGGCCGACG--GGCAATCCGCCATCTATGCCGCACAGCCTGCACTCATGGTCGAGAAAGG 7833 Query 8103 GATTGCCGGAACATACTGTAAAACGCCATTCGCTGATTCATATGCATTCATCAGTCACCC 8162 |||||||| || |||| || || | ||| ||| | ||| ||||||| || | Sbjct 7832 CATTGCCGGGACCCACTGCAAGACCCGGCTCGGCGATGCTCATGTGATCATCAGCCATCA 7773 Query 8163 GGCTACTGGCGCACCTTCCGTCTACATCATCGGGTCAGG-GCAGGCTTCACCAATTGCGA 8221 ||| || ||||| || || || ||| | || ||||| |||||| || | ||||| | Sbjct 7772 GGCCACCGGCGCGCCGTCGGTATACCTGATTAA-TCAGGCGCAGGCGACATCGATTGCCA 7714 Query 8222 CGGCCAGTATTGAGAAAATTATCCGCTCATACACGGCTGATGAACTGGCAACCGGGGTGA 8281 |||||| || ||||||||| | ||| ||||| ||||||||||| | || || | Sbjct 7713 CGGCCACCATCGAGAAAATTCTACGCAGCTACACACACGATGAACTGGCGAGCGCCGTCA 7654 Query 8282 TGGAGGCGTTGAGGTTCGATTCGCATGAACTGCTGATTATCCATCTCCCGCGTCATGTGC 8341 |||| | | | ||||| || ||| | || |||||||| | ||||| || ||| Sbjct 7653 TGGAAACCGTCCGTTTCGACAGCCACGAATTAGTGCTTATCCATTTGCCGCGACAGGTGT 7594 Query 8342 TGGTTTACGATGCCTCATCAAGCCAGAACGGGCCGCAATGGTGCATACTGAAAACCGGTT 8401 || ||| || ||| | | | ||||||||||||||||||| || | |||||||| || | Sbjct 7593 TGTGTTATGACGCCGCGGCCAACCAGAACGGGCCGCAATGGAGCCTGCTGAAAACGGGCT 7534 Query 8402 TATACGACGATGTTTATCGCGCCATCGATTTCATGTACGAAGGCAACCAGATTACGTGTG 8461 | || ||| | ||||||| ||||||||| |||| | | | | || | || |||| Sbjct 7533 TTTATCACGCTCCCTATCGCGGCATCGATTTTATGTTTGCCGACCATCACCTCACCTGTG 7474 Query 8462 GCGACAAGTCAGAAGCGGTGACAGGGCAGTTGCAATTCGACAT-TAGTAGTCAGTACGAC 8520 |||| || || || | || || | | || | ||| | | || || || Sbjct 7473 GCGATAAACACGATGCCCTCCTCGGCCAACTTGATTTTG-CATCTTCTGCGCAATATGAA 7415 Query 8521 AAGCAGCAAGAACATCTGTTGTTTACACCCCTCTTCAAAGCGGACAATGCCAGATGCTTC 8580 || | ||| || ||| | | | ||| || || ||||| || || |||||| | || Sbjct 7414 AAACCGCAGGAGCATGTTCTCTATACCCCGCTTTTCAAGGCAGATAATGCCCGCGTATTT 7355 Query 8581 GACCTCGAAGTTGAATCATCCACTGGTGTTGCTCAATACGCTGACCGCCTGTTCCTGTCT 8640 || | ||| | || |||| || || || || || ||| |||||||| ||||| || Sbjct 7354 GATTTTGAACTGGAGGCATCAACCGGCGTGGCGCACATCGCCGACCGCCTCTTCCTCTCC 7295 Query 8641 GCAACCACAGACGGAATCAATTACGGTCGCGAACAGATGATTGAGCAGAATGAGCCGTTT 8700 || ||| | ||||| || ||| || ||||||||||||||| | || |||| ||||||| Sbjct 7294 GCCACCGCCGACGGCATGCATTTTGGCCGCGAACAGATGATTAACCAAAATGCGCCGTTT 7235 Query 8701 GTGTACGACAAGAGAGTTTTATGGAAGCGTGTAGGTCGTATTCGTC-GATTAA---TCGG 8756 | ||| ||| || || || | ||| ||| ||| | | | || || || |||| Sbjct 7234 GCGTATGACCAGCGAATTCTCTGGCGGCG----GGTTGGCTACATCAGAAAAAATGTCGG 7179 Query 8757 ATTCAAACTGCGGGTAATCACCAAATCACCTGTAACACTATCCGGGTGTCAAATTCGTCT 8816 || ||| | ||||| |||||| ||| || || || || ||||| ||||| || | | Sbjct 7178 CTTTAAAGTACGGGTGATCACCTCATCGCCCGTGACGCTCTCCGGTTGTCAGATAAGGAT 7119 Query 8817 GGAGTAACATATGGCAGACCCGTCACTTAATAATCCTGTCATTATTCAGGCCACTCGTCT 8876 ||| || |||||| || | | |||||||| || || || |||| || || Sbjct 7118 GGAATA----ATGGCAAACGATACGCCAAATAATCCCGTGGAAATACACACCACGCGCCT 7063 Query 8877 TGATGCC 8883 |||| || Sbjct 7062 TGATACC 7056 Score = 336 bits (372), Expect = 6e-88 Identities = 642/943 (68%), Gaps = 2/943 (0%) Strand=Plus/Minus Query 12816 AAGTCGTGGAATTGCACAAGCCGAAGGCGCATTGGCATCAACACCAGGGATTGTTCAGGA 12875 |||||| || || ||||| |||||||||||||||||||| ||||| || || || || Sbjct 3869 AAGTCGCGGGATAGCACAGGCCGAAGGCGCATTGGCATCGACACCGGGAATAACACAAGA 3810 Query 12876 TGCCCATCAGGCAGCATTTAACGAAATATCATCAAAGTTAAGTCGAAACCTTGATGAATT 12935 ||| || | ||| || ||||| ||||| | ||| || | || || || |||| ||| Sbjct 3809 TGCTCACCGGGCCGCCTTTAATGAAATTGCCGAAAAATTTACCCGCAATCTCGATGCATT 3750 Query 12936 TGGTGCCGCATCTGGAACGGCATCAGAAAAAAGTGCGGCTATAAAACAAAGGATTCTTCA 12995 || || | | || |||||||||||||| ||||| || || ||| | || || | | Sbjct 3749 GGGCGCTGAGGCGGGGACGGCATCAGAAAAGAGTGCCGCGATTAAAGGACGGGTTTTAAA 3690 Query 12996 AAATCTTGATCAGATGAAGGATGCCGAGCGCGCGGCATGGGATGACGTGCGGTCAACAAT 13055 ||||| ||| | ||||| | || || | || || |||||| | |||||| | ||| Sbjct 3689 CAATCTGGATGAAATGAAAAAGGCGGAATGGGCCGCCTGGGATAATGTGCGGGACATAAT 3630 Query 13056 GCCAAATCAAAAAGCAAGAATGCTAAATGGTAATGCCGTTATTCAGGCAGAGCGATCTGC 13115 ||| | |||||| | | ||| | |||| || ||| | || ||| || Sbjct 3629 GCCGCAGCAAAAAATGCGGCTTAAAAACGCCAATGGGGTAATTGCTGGTGAAAAATCGGC 3570 Query 13116 TGGCATACCGCTTACTCCTGAAATGAAACAGTTTGTTCAGGCAAACAATCAAGGTGGAGT 13175 ||| | ||||| || | |||||||| || | | ||| || || ||| || || Sbjct 3569 GGGCGTTCCGCTGACCTCAGAAATGAAGCAACTCGACGCGGCGAATAAACAATCCGGCGT 3510 Query 13176 AACATTTGATGGCATGAAAGCATGGAGAGCGAAATTTGCTGATGCTGAGCAAAAATATAA 13235 || ||||| ||||||||||| ||| | || || ||||| || || ||||||||||||| Sbjct 3509 GACCTTTGAGGGCATGAAAGCGTGGCGCGCCAAGTTTGCCGACGCAGAGCAAAAATATAT 3450 Query 13236 GCGTAGCGGAGAGGCAAATGCGGCAAGGAGAGCAGGGGAAATACGCCGGGCAATTACTGA 13295 | | || || || ||||| || | ||||| || || | || || || || || || Sbjct 3449 CAGGAATGGCGAAGCCAATGCCGCCCGCAGAGCGGGTGAGGTTCGGCGCGCCATCACGGA 3390 Query 13296 TGATATGCGCACAATGGCGGAAAACGGCGGATTTCTTGATGACTGGCAAAAAGCTAATGA 13355 |||||||||| ||||| ||| | ||||| ||||||||||||||| || || | Sbjct 3389 TGATATGCGCGTTATGGCTGAACAGGGCGGTTTTCTTGATGACTGGACGCGGGCCAACGC 3330 Query 13356 TCTGTCTAAAGCGAGGCTATCCGCACAAGAGAGTGCAGAGTCTGTTTTTGGGCG-TGATT 13414 | || ||||| | | |||| | || ||| || || ||||| || || | | Sbjct 3329 GTTATCAAAAGCCCGATTGACCGCCCTTGACCATGCCGAATCGGTTTTCGGTCGCAGCCT 3270 Query 13415 TGGCAACAGATGCACTGATTACGAATGGAGTAAAATCTCTTCAATCATCGTCAGCTAAAG 13474 || ||| |||| ||||| || || || || ||| | || ||| | | |||| || | Sbjct 3269 TGCCAA-TGATGTGCTGATCACCAAGGGGGTGAAAGCGCTGCAAACCGCCTCAGAAAAGG 3211 Query 13475 GTCTTAATGGTCCTGCTGGATTCCATTCTATGATCCGCGCGCTGCCAGAATCAGAGCGTG 13534 | || || || | ||| || ||| | || ||| ||| ||||| ||| | || || | Sbjct 3210 GGCTGAACGGCGAGGGTGGTTTTCATACCATTATCTCCGCACTGCCTGAAACCGAACGCG 3151 Query 13535 TTCCTGCTATATCATCAATGTTGCAGGATGCTATCTCGCATGGTGTACGTGGTGGCAAAT 13594 |||| || ||| | || ||| | |||||||| | |||||||| || || || |||||| Sbjct 3150 TTCCGGCCATAGCGTCCATGCTTCAGGATGCGCTATCGCATGGCGTTCGGGGCGGCAAAG 3091 Query 13595 CTGATGCAGCAGGAATTCACCATATCGCAGGGATACTTACCCCACAAAATGTAAAAGCCA 13654 | || | | || ||| ||||| | ||| | ||| |||||||| |||| Sbjct 3090 CCGAAGGGACCGGTATTGCGCATATTACCTCGATTTTGACCGAGCAAAATGTCGGTGCCA 3031 Query 13655 TTAGCAGATATTCCTCAGAACTCGGAAGAATTGCTGATGCATATGGCACTCTTGCAAGAG 13714 | || ||||||| ||||| || | || || ||||| ||||| | ||||| |||| Sbjct 3030 TCAGTCAATATTCCAAGGAACTGGGCCGCATCGCCGATGCTTATGGGAAACTTGCCAGAG 2971 Query 13715 CAGCAGTGAAACCTCAGCAGTATATTGAAAGAACAGGGAGAAC 13757 | ||||| ||||| ||||| ||||| || | ||||| ||||| Sbjct 2970 CCGCAGTAAAACCCCAGCAATATATCGAGCGCACAGGTAGAAC 2928 Score = 127 bits (140), Expect = 6e-25 Identities = 243/353 (69%), Gaps = 10/353 (3%) Strand=Plus/Minus Query 16596 TCTGGAGCAAATTAAATGACAGACATTACAGCCAATGTGATCGTATCGATGCCTTCGCAA 16655 ||||||| ||| |||| | || ||||| | || | ||||||| ||||| || ||| Sbjct 2475 TCTGGAGAAAACCCAATGGCTGATATTACGCCAAACATTGTCGTATCCATGCCGTCACAA 2416 Query 16656 CTCTTCACTATGGCGCGTTCTTTTAAAGCC-GTAGCTAAGGGCAAGATTTATATCGGAAA 16714 | || || | || ||||| || ||||| || ||||| ||||| ||||| || Sbjct 2415 ATTTTTACCCAGCGCCGGGAATTTAAGTCCTGTAGC-AACGGCAAAATTTACATCGGCAA 2357 Query 16715 AATTGACACTGACCCCGTAAATCCTGAAAACCAGATTCCTGTATATCTGGAACGAGAAGA 16774 ||| ||||| |||||| || ||||||| || || || || ||||||||| ||||| Sbjct 2356 AATCGACACCGACCCCACAATAGCTGAAAATCAAATACCCGTTTATCTGGAAAATGAAGA 2297 Query 16775 TGGTACTCATATTCAGGTGCCACAGCCAATCG-TTATCAACG---CTGCTGGATATCCGG 16830 || | ||| | || | |||| || |||||| || | | ||| || |||| Sbjct 2296 CGGAAAATATACCCGAGT----CGGCCAGCCGCTTATCATCGGCACGGGTGGCTACCCGG 2241 Query 16831 TATACAACGGACAGATTGCCAAGTTTGTAACTGTGCAAGGCCATTCTATGGCTGTTTACG 16890 | |||||||| ||||||||||| || || || | |||||||| ||||||| || || | Sbjct 2240 TCTACAACGGGCAGATTGCCAAATTCGTGACAGAAGAAGGCCATGCTATGGCAGTGTATG 2181 Query 16891 ATGCATACGGCACTCAACAATTCTACTATCCGAATGTGCTAAAGTATGATCCA 16943 | | |||| || || || || | || || ||||| || ||||| ||| Sbjct 2180 ACGGCGACGGGGTACAGCAGTTTTATTTCCCCAACGTGCTGAAATATGAGCCA 2128 Score = 102 bits (112), Expect = 2e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 10206 TATCAACACTGGAAGGTCAGAACAGTGCTCTCAATCAGTATTACAACTCAGAACAGTATA 10265 |||| || || || || || |||| || ||| | | |||||||||||||| ||||| Sbjct 5926 TATCGACGCTCGAGGGACAAAACAAGGCGCTCGGTGATTATTACAACTCAGACCAGTACC 5867 Query 10266 AACAATTGGCTGATCAGGCTCGCTATCAAAGCCTGAATGCAGCGGAAGCCACCGGAGGTC 10325 ||| |||| || ||||| || ||||| ||| | || || || ||||| || | Sbjct 5866 GGCAACTGGCCGACCAGGCGCGTTATCAGTCGCTGGCGTCCGCAGAGGCGACCGGCGGAC 5807 Query 10326 TTGGCTCTACAGCAACATCAAACCAAATTGCATCCATTGCACCAACGCTCGGGCAGAACT 10385 | || || || || || || ||| | || |||| || || ||||||||||||||| Sbjct 5806 TGGGGTCAACGGCTACCGGTAATCAACTGGCGGCCATCGCGCCTGCGCTCGGGCAGAACT 5747 Query 10386 GGTTGTCAGGGCAGATGCAAAACTATGGCAA 10416 || | || || || ||||| ||||| ||||| Sbjct 5746 GGCTCTCCGGTCAAATGCAGAACTACGGCAA 5716 >seq724 Length=1463 Score = 125 bits (138), Expect = 2e-24 Identities = 178/246 (72%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 38191 GAAGACCCATACGAATTCACCGCGCATGCGGAGATTGTCTATGGGGAGATGACAATAGAG 38250 |||||||| || || ||||| ||| || | || ||| ||||||||||| || || Sbjct 2 GAAGACCCCTATGAGTTCACAATGCACGCAAACATCACCTACGGGGAGATGACCATTGAC 61 Query 38251 CGTGTAGCGCGTCTGGCGTGTGTTCCTGTGCGCTTAAAGACATGGCAGATGGATGAGCTA 38310 || || |||| |||||| || || || || |||||| | ||||||||||| || | Sbjct 62 CGCGTGGCGCATCTGGCAGCGGTACCCGTACGGTTAAAGCCGTGGCAGATGGACGATATT 121 Query 38311 TACCAGCACATGAAGAACGAACTGAAGCGGTTACAGGAGCTAAGGGCGCATGGTGTTACA 38370 |||||||||||||| || || ||||| | | ||| || | ||| || | ||| Sbjct 122 TACCAGCACATGAACGCTGAGCTAAAGCGCCTGCGGGAATTA--CGAGCAGGGGGCAACA 179 Query 38371 --GGGCGCATCGATTTCACATTACCAGACTGGTATCAGGACGGAATTCAACT-CCGCATG 38427 |||| ||||| ||||| |||| || ||||||||||| || | ||| || ||||||| Sbjct 180 TCTGGCGAATCGAGTTCACGCTACCGGATTGGTATCAGGAGGGCA-TCACCTACCGCATG 238 Query 38428 GGGGAA 38433 |||||| Sbjct 239 GGGGAA 244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137526903646236