Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_013059.1 Length=40975 Score E Sequences producing significant alignments: (Bits) Value seq556 378 2e-100 seq724 120 8e-23 >seq556 Length=23517 Score = 378 bits (418), Expect = 2e-100 Identities = 779/1147 (68%), Gaps = 24/1147 (2%) Strand=Plus/Minus Query 7747 TATCGCTATGATGGCGCGGTTAAAACCGTCTCAAACTGGCCTGCAGACAGCGGATTCACG 7806 || || || |||||| |||| ||||| | ||||||||| ||||| || |||| Sbjct 8188 TACCGTTACGATGGCACGGTAAAAACACTGGAAAACTGGCCGAAAGACAAAAAATACACG 8129 Query 7807 CAGTATGAGTTAGGCTCAGTCCGTGACATTACTCGCTTACGTGGGCGTTATGCATGGTCA 7866 || || || | || | || || || || | || || || ||||||| |||| Sbjct 8128 CAATACGATATTGGTACCGTGCGGGATATGTGCCATTTGCGCGGACGTTATGTCTGGTGT 8069 Query 7867 AAAGACGGCACAGATTCATGGTT--TATCACTGACCTTGAAGATGAATCGCATCCTGACC 7924 ||||||||||| ||| || || | |||| || | ||||||||||| || ||||||| Sbjct 8068 AAAGACGGCACCGAT--ATTTTTGGTGTCACCGATTTGGAAGATGAATCTCACCCTGACC 8011 Query 7925 GCTACAGTGCAGAATATCGCGCAGAATCGCAGCCTGACGGGATAATTGGCATAGGTTCAT 7984 ||||| | || |||||||| ||||| || || ||||| || || || || | | | Sbjct 8010 GCTACCGCGCGCTGTATCGCGCCGAATCACAACCCGACGGCATTATCGGTATTGATAGCT 7951 Query 7985 GGCGAGATTTCATCGTCTGCTTTGGCTCGTCGACGATAGAGTATTTCTCCCTGACAGGCG 8044 |||| ||||| || |||||||||||| |||| || || || ||||| |||||||| || | Sbjct 7950 GGCGCGATTTTATTGTCTGCTTTGGCGCGTCCACCATTGAATATTTTTCCCTGACCGGGG 7891 Query 8045 CAACCACCGTTGGCGCTGCGT--TGTATGTCGCGCAGCCATCGTTAATGGTACAGAAGGG 8102 | || || ||| | || | |||| ||| ||||| | | ||||| |||| || Sbjct 7890 CGGCCGACG--GGCAATCCGCCATCTATGCCGCACAGCCTGCACTCATGGTCGAGAAAGG 7833 Query 8103 GATTGCCGGAACATACTGTAAAACGCCATTCGCTGATTCATATGCATTCATCAGTCACCC 8162 |||||||| || |||| || || | ||| ||| | ||| ||||||| || | Sbjct 7832 CATTGCCGGGACCCACTGCAAGACCCGGCTCGGCGATGCTCATGTGATCATCAGCCATCA 7773 Query 8163 GGCTACTGGCGCACCTTCCGTCTACATCATCGGGTCAGG-GCAGGCTTCACCAATTGCGA 8221 ||| || ||||| || || || ||| | || ||||| |||||| || | ||||| | Sbjct 7772 GGCCACCGGCGCGCCGTCGGTATACCTGATTAA-TCAGGCGCAGGCGACATCGATTGCCA 7714 Query 8222 CGGCCAGTATTGAGAAAATTATCCGCTCATACACGGCTGATGAACTGGCAACCGGGGTGA 8281 |||||| || ||||||||| | ||| ||||| ||||||||||| | || || | Sbjct 7713 CGGCCACCATCGAGAAAATTCTACGCAGCTACACACACGATGAACTGGCGAGCGCCGTCA 7654 Query 8282 TGGAGGCGTTGAGGTTCGATTCGCATGAACTGCTGATTATCCATCTCCCGCGTCATGTGC 8341 |||| | | | ||||| || ||| | || |||||||| | ||||| || ||| Sbjct 7653 TGGAAACCGTCCGTTTCGACAGCCACGAATTAGTGCTTATCCATTTGCCGCGACAGGTGT 7594 Query 8342 TGGTTTACGATGCCTCATCAAGCCAGAACGGGCCGCAATGGTGCATACTGAAAACCGGTT 8401 || ||| || ||| | | | ||||||||||||||||||| || | |||||||| || | Sbjct 7593 TGTGTTATGACGCCGCGGCCAACCAGAACGGGCCGCAATGGAGCCTGCTGAAAACGGGCT 7534 Query 8402 TATACGACGATGTTTATCGCGCCATCGATTTCATGTACGAAGGCAACCAGATTACGTGTG 8461 | || ||| | ||||||| ||||||||| |||| | | | | || | || |||| Sbjct 7533 TTTATCACGCTCCCTATCGCGGCATCGATTTTATGTTTGCCGACCATCACCTCACCTGTG 7474 Query 8462 GCGACAAGTCAGAAGCGGTGACAGGGCAGTTGCAATTCGACAT-TAGTAGTCAGTACGAC 8520 |||| || || || | || || | | || | ||| | | || || || Sbjct 7473 GCGATAAACACGATGCCCTCCTCGGCCAACTTGATTTTG-CATCTTCTGCGCAATATGAA 7415 Query 8521 AAGCAGCAAGAACATCTGTTGTTTACACCCCTCTTCAAAGCGGACAATGCCAGATGCTTC 8580 || | ||| || ||| | | | ||| || || ||||| || || |||||| | || Sbjct 7414 AAACCGCAGGAGCATGTTCTCTATACCCCGCTTTTCAAGGCAGATAATGCCCGCGTATTT 7355 Query 8581 GACCTCGAAGTTGAATCATCCACTGGTGTTGCTCAATACGCTGACCGCCTGTTCCTGTCT 8640 || | ||| | || |||| || || || || || ||| |||||||| ||||| || Sbjct 7354 GATTTTGAACTGGAGGCATCAACCGGCGTGGCGCACATCGCCGACCGCCTCTTCCTCTCC 7295 Query 8641 GCAACCACAGACGGAATCAATTACGGTCGCGAACAGATGATTGAGCAGAATGAGCCGTTT 8700 || ||| | ||||| || ||| || ||||||||||||||| | || |||| ||||||| Sbjct 7294 GCCACCGCCGACGGCATGCATTTTGGCCGCGAACAGATGATTAACCAAAATGCGCCGTTT 7235 Query 8701 GTGTACGACAAGAGAGTTTTATGGAAGCGTGTAGGTCGTATTCGTC-GATTAA---TCGG 8756 | ||| ||| || || || | ||| ||| ||| | | | || || || |||| Sbjct 7234 GCGTATGACCAGCGAATTCTCTGGCGGCG----GGTTGGCTACATCAGAAAAAATGTCGG 7179 Query 8757 ATTCAAACTGCGGGTAATCACCAAATCACCTGTAACACTATCCGGGTGTCAAATTCGTCT 8816 || ||| | ||||| |||||| ||| || || || || ||||| ||||| || | | Sbjct 7178 CTTTAAAGTACGGGTGATCACCTCATCGCCCGTGACGCTCTCCGGTTGTCAGATAAGGAT 7119 Query 8817 GGAGTAACATATGGCAGACCCGTCACTTAATAATCCTGTCATTATTCAGGCCACTCGTCT 8876 ||| || |||||| || | | |||||||| || || || |||| || || Sbjct 7118 GGAATA----ATGGCAAACGATACGCCAAATAATCCCGTGGAAATACACACCACGCGCCT 7063 Query 8877 TGATGCC 8883 |||| || Sbjct 7062 TGATACC 7056 Score = 102 bits (112), Expect = 2e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 10209 TATCAACACTGGAAGGTCAGAACAGTGCTCTCAATCAGTATTACAACTCAGAACAGTATA 10268 |||| || || || || || |||| || ||| | | |||||||||||||| ||||| Sbjct 5926 TATCGACGCTCGAGGGACAAAACAAGGCGCTCGGTGATTATTACAACTCAGACCAGTACC 5867 Query 10269 AACAATTGGCTGATCAGGCTCGCTATCAAAGCCTGAATGCAGCGGAAGCCACCGGAGGTC 10328 ||| |||| || ||||| || ||||| ||| | || || || ||||| || | Sbjct 5866 GGCAACTGGCCGACCAGGCGCGTTATCAGTCGCTGGCGTCCGCAGAGGCGACCGGCGGAC 5807 Query 10329 TTGGCTCTACAGCAACATCAAACCAAATTGCATCCATTGCACCAACGCTCGGGCAGAACT 10388 | || || || || || || ||| | || |||| || || ||||||||||||||| Sbjct 5806 TGGGGTCAACGGCTACCGGTAATCAACTGGCGGCCATCGCGCCTGCGCTCGGGCAGAACT 5747 Query 10389 GGTTGTCAGGGCAGATGCAAAACTATGGCAA 10419 || | || || || ||||| ||||| ||||| Sbjct 5746 GGCTCTCCGGTCAAATGCAGAACTACGGCAA 5716 >seq724 Length=1463 Score = 120 bits (132), Expect = 8e-23 Identities = 177/246 (72%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 36150 GAAGACCCATACGAATTCACCGCGCATGCGGAGATTGTCTATGGGGAGATGACAATAGAG 36209 |||||||| || || ||||| ||| || | || ||| ||||||||||| || || Sbjct 2 GAAGACCCCTATGAGTTCACAATGCACGCAAACATCACCTACGGGGAGATGACCATTGAC 61 Query 36210 CGTGTAGCGCGTCTGGCGTGTGTTCCTGTGCGCTTAAAGACATGGCAGATGGATGAGCTA 36269 || || |||| |||||| || || || || |||||| | ||||||||||| || | Sbjct 62 CGCGTGGCGCATCTGGCAGCGGTACCCGTACGGTTAAAGCCGTGGCAGATGGACGATATT 121 Query 36270 TACCAACACATGAAGAACGAACTGAAGCGGTTACAGGAGCTAAGGGCGCATGGTGTTACA 36329 ||||| |||||||| || || ||||| | | ||| || | ||| || | ||| Sbjct 122 TACCAGCACATGAACGCTGAGCTAAAGCGCCTGCGGGAATTA--CGAGCAGGGGGCAACA 179 Query 36330 --GGGCGCATCGATTTCACATTACCAGACTGGTATCAGGACGGAATTCAACT-CCGCATG 36386 |||| ||||| ||||| |||| || ||||||||||| || | ||| || ||||||| Sbjct 180 TCTGGCGAATCGAGTTCACGCTACCGGATTGGTATCAGGAGGGCA-TCACCTACCGCATG 238 Query 36387 GGGGAA 36392 |||||| Sbjct 239 GGGGAA 244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130995831694494