Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_013599.1 Length=36674 Score E Sequences producing significant alignments: (Bits) Value seq813 132 1e-26 >seq813 Length=1717 Score = 132 bits (146), Expect = 1e-26 Identities = 218/312 (70%), Gaps = 3/312 (1%) Strand=Plus/Minus Query 1859 TGTTTCTCTGCGTTTCACCGCTTCCAGCAGCAGGTCCTGTACTTCGCGTTTAGATTCACG 1918 ||||| | | || |||| ||| || | | | |||||| || | || || || || || Sbjct 490 TGTTTTT-TCCGCTTCATCGCCTCTAATAAAATGTCCTGCACCTGACGCTTTGAGTCGCG 432 Query 1919 GCGGGCCATCACCAATTCATCCACCGTGCCCGCCGCCACGATGTGGTGAATAAATACAGG 1978 || |||| |||| |||||| || || | | || || |||||||| || ||||| || Sbjct 431 TCGCTCCATGACCAGTTCATCGACGGTATCGGTAGCGACAATGTGGTGGATGAATACCGG 372 Query 1979 CCGCTGATGTCCGGCTTGCGCCTGACGTGTCGGCCCAATGCGTTCGATGATCTGCTGGTA 2038 ||| | || || || || ||||| || || || | ||||| ||||| ||||||||||| Sbjct 371 GCGCGGGTGCCCTGCCTGTGCCTGCCGGGTAGGGCTGATGCGCTCGATAATCTGCTGGTA 312 Query 2039 CTGCTCCAGGTCCCACCAGTGGCCGAAGAAGGCCAAAATATTTCCGCCGTCTTGCAGATT 2098 |||||| || |||| ||||| ||| || || | ||| |||||||| || || || Sbjct 311 CTGCTCAAGTCCCCATCAGTGCGAGAAAAACACC--ACCATTACCGCCGTCCTGAAGGTT 254 Query 2099 TAAGCCATGACCGGCACTGGCCGGATGGGCAAATAGCACGGGAATGTTCCCCGCATTCCA 2158 | || || ||||| ||||| || || || || || | || || || || ||||| Sbjct 253 CAGCCCGTGCCCGGCGCTGGCAGGGTGCGCGAACAGTAGCGGTATCCGTCCGGCGTTCCA 194 Query 2159 ATCGCGGATCGT 2170 |||| ||| || Sbjct 193 GTCGCTGATGGT 182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117232901530632