Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq53 118 2e-21 seq308 84.2 5e-11 >seq53 Length=1361919 Score = 118 bits (130), Expect = 2e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 ||| || || || || | |||||||| | | ||| | || ||||||||||| || || Sbjct 1240414 AGTTGATTCTTTCTGTATATTGTAGTCCGAGAGAGTACGACCGTCTTCCAGCTGTTTGCC 1240355 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT 199551 || ||||| | |||||||||||| ||| ||| |||||| || ||||| ||| ||| Sbjct 1240354 AGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCTTTATCTTGAATTTTTGCCTT 1240295 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 ||| ||||| || || | || |||||| ||||| || || || || || || | ||| Sbjct 1240294 AACGTTTTCGATAGTATCCGATGGTTCTACCTCCAAAGTAATGGTTTTGCCAGTCAAAGT 1240235 Query 199612 TTTCACAAAAATTTG 199626 ||| ||||| ||||| Sbjct 1240234 TTTAACAAATATTTG 1240220 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 |||||||| ||||||||||| | ||| || || | | ||| | |||||||||| || Sbjct 1234438 TGGAGAGTAGACTCCTTTTGAATGTTATAATCGGAGAGAGTACGGCCATCTTCCAATTGT 1234379 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || |||||||| | |||||||||||| || ||| ||||| ||||| ||||| Sbjct 1234378 TTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTTA 1234319 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 || ||| ||| | ||| || | | || || ||||| ||||| || ||||| || Sbjct 1234318 GCTTTGACGTTTTCAATGGTATCGGAAGGCTCGACTTCCAAAGTGATGGTTTTACCGGTC 1234259 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | |||||| || || ||||| Sbjct 1234258 AAAGTTTTGACGAAGATTTG 1234239 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || || || || | |||||| || | | ||| | |||||||||| || || || Sbjct 1239957 GTTGATTCTTTCTGTATGTTGTAATCCGAGAGAGTGCGACCATCTTCCAATTGTTTACCA 1239898 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 |||||||| | |||||||||||| || ||| ||||| || || ||||| || Sbjct 1239897 GCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGGATCTTAGCTTTA 1239838 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| ||| || ||||| | | ||||| ||||| || || || || || || | |||| Sbjct 1239837 ACGTTTTCAACAGTGTCGGAAGGCTCTACCTCCAAAGTAATGGTTTTGCCAGTCAAAGTT 1239778 Query 199613 TTCACAAAAATTTG 199626 || ||||||||||| Sbjct 1239777 TTAACAAAAATTTG 1239764 Score = 89.7 bits (98), Expect = 1e-12 Identities = 142/203 (70%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || || ||||| | ||||| |||| ||| || | ||||||||||| || || || Sbjct 1232540 GTTGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCATCTTCCAGTTGTTTGCCA 1232481 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || ||||| | ||||||||| || ||| ||| |||||| || || |||||| || Sbjct 1232480 GCAAAGATCAAACGCTGCTGATCGGGAGGAATACCTTCTTTGTCTTGGATCTTTGCTTTT 1232421 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||| | || || | || ||| || || || ||||| || || || || | || Sbjct 1232420 ACATTTTCAATTGTATCAGATGGTTCCACTTCTAAAGTGATTGTTTTGCCAGTCAATGTC 1232361 Query 199613 TTCACAAAAATTTGGTACATTTT 199635 || || || ||||| |||||| Sbjct 1232360 TTTACGAAGATTTG---CATTTT 1232341 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||||| ||||||||||| | |||||| || | | ||| | |||||| Sbjct 1234219 AGGACCAAATGGAGAGTAGACTCCTTTTGTATGTTGTAATCGGAGAGAGTACGGCCATCT 1234160 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 |||| || || || |||||||| | |||||||||||| || Sbjct 1234159 TCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGG 1234119 >seq308 Length=190705 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 ||||| || | || || || ||||| | || || || | || || | ||||||||| Sbjct 86640 ACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCGATAATGTGCGACCATCTTCC 86699 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | || ||||| |||||||| | || || ||||| || |||||| ||| |||||| Sbjct 86700 AATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTGGAATTCCCTCTTTGTCCTGA 86759 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| ||||| ||| | || || | | || || || | || || ||||| Sbjct 86760 ATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGACCTCAAGAGTAATGGTCTTG 86819 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| |||||||| || Sbjct 86820 CCCGTAAGGGTTTTTACAAAAATCTG 86845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178896661755617