Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq53 111 2e-19 seq1 104 3e-17 >seq53 Length=1361919 Score = 111 bits (122), Expect = 2e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | ||||||||||| | |||||| || || || || || ||||| || | Sbjct 1239989 TGCCACCGCGCAAACGCAACACTAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCCG 1239930 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || | || || || ||||| ||||| ||||||||||| | | Sbjct 1239929 AGAGAGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGG 1239870 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-TCGCCACCGTGTCGCTCGATTCC 46543 | | | ||||| || |||||| ||| | || | | || |||||| | || Sbjct 1239869 GAATACCTTCCTTATCTTGGATCTT-AGCTTTAACGTTTTCAACAGTGTCGGAAGGCTCT 1239811 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| || ||||||||||| |||| ||||||||||| |||||||| Sbjct 1239810 ACCTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAAAATTTGCAT 1239761 Score = 111 bits (122), Expect = 2e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| |||||| || || || || ||||||||||| || ||||| || | Sbjct 1240432 ACGCAACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCGAGAGAGTACGACC 1240373 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||| ||||| || || ||||| ||||||||||| | || | | || ||| Sbjct 1240372 GTCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATAC-CTTCTT 1240314 Query 46498 GTCCATGATCTTCTTCTTGAGCG-TCGCCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 | ||| || | | | | || | | | || || | ||| || |||| || | Sbjct 1240313 TATCTTGAATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTTCTACCTCCAAAGTAA 1240254 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||||||||| |||| ||||||||||| ||||||||| Sbjct 1240253 TGGTTTTGCCAGTCAAAGTTTTAACAAATATTTGCATT 1240216 Score = 109 bits (120), Expect = 6e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| |||||||||| |||||||| | |||||| || || |||||||| | Sbjct 1240204 ACGCAACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCCGAAAGAGTGCGGCC 1240145 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || | || ||||| || || ||||| |||||||| || | || | | || ||| Sbjct 1240144 GTCTTCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTGGAGGAATAC-CTTCTT 1240086 Query 46498 GTCCATGATCTTCTTCTTGAGCG-TCGCCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 | ||| || | ||| | || | | | || || | ||| || |||| || | Sbjct 1240085 TATCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTAA 1240026 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||| || |||| |||||||||||||| ||||| Sbjct 1240025 TGGTTTTTCCAGTCAAAGTTTTAACAAAGATCTGCAT 1239989 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| || || | ||| | ||| || ||||||||||| || ||||| Sbjct 1241789 CCTCCGCGAAGACGTAAGACTAAATGGAGTGTTGATTCTTTTTGGATATTTTAATCGGAC 1241730 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||||||| |||| || | || ||||| || || ||||| ||||| || |||| | Sbjct 1241729 AGAGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGTTGATCGGGAGAA 1241670 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| || ||| || || | ||| | | || || || || || Sbjct 1241669 ATACCTTCCTTATCTTGGATTTTTGCTTTAACCGTTTCGATAGTATCCGACGGCTCTACC 1241610 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| || || |||||||| |||| ||||||||||||||||||||| Sbjct 1241609 TCCAAAGTAATAGTTTTGCCAGTCAAAGTTTTAACAAAGATTTGCATT 1241562 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 || || |||| ||| | ||| ||||||||| || || || ||||| ||||| || | Sbjct 1234450 CGTAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCGGAGAGAGTACGGCCA 1234391 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || | || || || ||||| ||||| ||||||||||| | || | | ||||| Sbjct 1234390 TCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTA 1234331 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| |||| | | | || ||| | || || |||| |||||| Sbjct 1234330 TCCTGGATCTTAGCTTTGACGTTTTCAATGGTATCGGAAGGCTCGACTTCCAAAGTGATG 1234271 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || |||| ||||| || ||||||||||| Sbjct 1234270 GTTTTACCGGTCAAAGTTTTGACGAAGATTTGCAT 1234236 >seq1 Length=10097680 Score = 104 bits (114), Expect = 3e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| ||||| | |||| ||||||||| || || || |||||||| || || Sbjct 7547615 CCACCTCGCAAACGAAGTACCAAATGCAATGTCGATTCTTTCTGTATATTGTAATCAGAC 7547556 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| ||| | || || | || ||||| ||||| ||||| || ||||| || | || Sbjct 7547555 AAAGTCCGCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGA 7547496 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||| |||||| || || ||||| | | | |||||| | || || Sbjct 7547495 ATGCCCTCTTTGTCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACT 7547436 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 |||| || || |||||||| || || |||||||| || ||||||||||| Sbjct 7547435 TCCAAAGTAATTGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTT 7547386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565226734892520