Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq184 149 6e-31 seq53 122 9e-23 seq1 114 1e-20 seq308 113 5e-20 >seq184 Length=525875 Score = 149 bits (164), Expect = 6e-31 Identities = 341/508 (67%), Gaps = 14/508 (3%) Strand=Plus/Minus Query 132870 TTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGA 132929 ||| | ||||| || ||||| || ||||| |||||||| || || || || | || Sbjct 28825 TTGTATCAAATATTTAAACATTAAAACCGCAAATTCGCAATGTAAACCTTCATCGCGTGA 28766 Query 132930 AATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATAT 132989 || | ||| || || || | || ||||| | || ||||| || ||||||||||| Sbjct 28765 TATTAATTCATTAGAAAATGTTAGACCCGGCATTATTCCACGTTTCTTAAGCCAAAATAT 28706 Query 132990 GGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTC 133049 | || ||||| || |||||| | || |||||||| || ||||| | | ||||| Sbjct 28705 CGAAGCAAAACTTCCACTAAAGAATATACCTTCGACGGCAGCAAAAGCTATGACACGCTC 28646 Query 133050 GCCGAACGTGGCTT----CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTT 133105 || || | || | || | ||||| | |||||||| || || | || Sbjct 28645 ACCAAAATTCGCCGAACGCGATGAT----ATCCAAGCTAAAGCCCATTCCGCTTTCTTTT 28590 Query 133106 TGACGCACGGCATCGTTTCGATGGCGTTCAACA---AACGGAGTTTCTCTTCCGAGGAAC 133162 | || |||||||||| || ||||| || || | || | ||| || ||| || | Sbjct 28589 TAACTAACGGCATCGTCTCAATGGCATTAAAAAGATAATCGCGTT-CT-TTCGGATCTGC 28532 Query 133163 GCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTT 133222 | | | || || || || |||||||||||||||||| || || ||||| |||| Sbjct 28531 G-ATAAATGTTTCAATAAGTAAACTATACATTTCCGAGTGTACATTTTCGATGGCTATTT 28473 Query 133223 GAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCA 133282 |||| || |||||||| || || ||| || || |||||||||| ||||| || || | Sbjct 28472 GAAAACCATAAAAGCAACGAGCTTCGGTTACTTGAACTTCTTGAGAAAAACGTTCCACTA 28413 Query 133283 GATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAAT 133342 ||| || || || |||||||| || || ||||| |||| || || || |||| Sbjct 28412 AATTCTCATTAACAATGCCGTCAGATGCCGCAAAAAAAGCCAAAACATGTGAAATAAAAT 28353 Query 133343 GGCGCTCGTTGTCGTTCAAGCGCTCCCA 133370 | || || | || | || |||||||| Sbjct 28352 GACGTTCATCATCAGTTAATCGCTCCCA 28325 >seq53 Length=1361919 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | || ||||||||||| || | || || ||| | || Sbjct 1239761 ATGCAAATTTTTGTTAAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAGCCTTCC 1239820 Query 38304 GACAGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||||| |||||| || |||| || || || || |||||| | ||||| Sbjct 1239821 GACACTGTTGAAAACG-TTAAAGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCA 1239879 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| || ||||| |||| || | ||||| ||| || ||||| Sbjct 1239880 GCAGCGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACTCTCTCGGATTACAA 1239939 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| || || ||| | || ||||||| ||| |||||||| | || ||| Sbjct 1239940 CATACAGAAAGAATCAACCTTGCATTTAGTGTTGCGTTTGCGCGGTGGC 1239988 Score = 116 bits (128), Expect = 4e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||||||||| || ||||| | || ||||||||||| || | || || || | | Sbjct 1240216 AATGCAAATATTTGTTAAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAACCATC 1240275 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | ||||| |||| | |||||| | || ||||| || ||||| | |||| Sbjct 1240276 GGATACTATCGAAAACG-TTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGACC 1240334 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | || |||||||||||||| |||| || || ||| ||||||| Sbjct 1240335 AGCAGCGTTTGATCTTTGCTGGCAAACAGCTGGAAGACGGTCGTACTCTCTCGGACTACA 1240394 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 | || || || ||| | || ||||||||||| ||||| Sbjct 1240395 ATATACAGAAAGAATCAACTTTGCATTTGGTGTTGCGT 1240432 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || || ||||||||||| | || |||||| | || Sbjct 1234236 ATGCAAATCTTCGTCAAAACTTTGACCGGTAAAACCATCACTTTGGAAGTCGAGCCTTCC 1234295 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || ||||| | |||| || |||| || || || || |||||| | ||||| Sbjct 1234296 GATACCATTGAAAACG-TCAAAGCTAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCA 1234354 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| || ||||| |||| || | || || ||| ||| || || Sbjct 1234355 GCAGCGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTCTCTCCGATTATAA 1234414 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 ||| |||||||| | || || |||||||| Sbjct 1234415 CATTCAAAAGGAGTCTACTCTCCATTTGGT 1234444 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 |||||||||||| |||||||| || | || |||||||| ||||| | || || || | Sbjct 1232340 AAAAATGCAAATCTTCGTAAAGACATTGACTGGCAAAACAATCACTTTAGAAGTGGAACC 1232399 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | || | | ||| | |||| ||| |||| |||||||| || ||||| |||| Sbjct 1232400 ATCTGATACAATTGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGTATTCCTCCCGA 1232459 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| | || | || |||||||| ||||| || | |||||| | || || Sbjct 1232460 TCAGCAGCGTTTGATCTTTGCTGGCAAACAACTGGAAGATGGGCGCACATTGTCTGATTA 1232519 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| || ||||| ||| | || |||| ||||| || ||| || | || ||| Sbjct 1232520 CAATATACAAAAAGAATCAACATTGCACTTGGTTCTACGTCTGCGTGGTGGC 1232571 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || |||||||| | || |||||| |||| || | || || || | | Sbjct 1241334 AATGCAAATCTTTGTAAAAACTTTGACTGGCAAATCCATTACTTTGGAGGTAGAACCATC 1241393 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | ||||| |||||| |||||| | || ||||| || ||||| | || | Sbjct 1241394 AGATACTATCGAAAACG-TTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGATC 1241452 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | || |||||||| | || |||| ||||| || || |||| Sbjct 1241453 AGCAGCGTTTGATCTTTGCTGGCAAACAATTAGAAGACGGTCGCACTCTTTCGGATTACA 1241512 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 | || || || ||| | || ||||||||||||||||| Sbjct 1241513 ATATACAGAAAGAATCAACTTTGCATTTGGTGCTGCGT 1241550 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| | || || |||||||| || | || || || | | Sbjct 1239989 ATGCAGATCTTTGTTAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTAGAACCATCG 1240048 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||||| |||||| |||||| | || ||||| || ||||| | || || Sbjct 1240049 GATACTATCGAAAACG-TTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCA 1240107 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | |||| || |||||||| | || |||| ||||| || || ||||| Sbjct 1240108 GCAGCGTTTGATTTTTGCTGGCAAACAATTAGAAGACGGCCGCACTCTTTCGGATTACAA 1240167 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 | ||||||||| | || ||||||||||| ||||| Sbjct 1240168 TGTACAAAAGGAATCTACATTGCATTTGGTGTTGCGT 1240204 >seq1 Length=10097680 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 |||||||||||| ||||| ||||| || || |||||||| || || | || || ||| | Sbjct 7547385 AAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACAATTACTTTGGAAGTTGAGCC 7547444 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | ||| | || | ||||| | ||||||||||| ||||| | || Sbjct 7547445 TTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGACAAAGAGGGCATTCCTCCAGA 7547504 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || || || | || | ||| |||||||| |||| || | ||| || | || || Sbjct 7547505 TCAGCAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGCGGACTTTGTCTGATTA 7547564 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || || || ||| |||| |||||||||| || |||||| |||| || Sbjct 7547565 CAATATACAGAAAGAATCGACATTGCATTTGGTACTTCGTTTGCGAGGTGG 7547615 >seq308 Length=190705 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || |||||||| || |||||||| ||||| || | || |||||| || Sbjct 86851 AATATGCAGATTTTTGTAAAAACCCTTACGGGCAAGACCATTACTCTTGAGGTCGAGCCC 86792 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | ||| | |||| || || | ||||||||||||||||| ||||| Sbjct 86791 TCTGATACTATTGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 86732 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| || | || | ||| || ||||| |||| || | ||||| | || || Sbjct 86731 CAACAACGATTGATCTTCGCTGGAAAACAATTGGAAGATGGTCGCACATTATCGGATTAT 86672 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| ||| | ||| | ||| | ||| |||||||| |||| || Sbjct 86671 AATATTCAAAAAGAATCCACGTTACATCTTGTGTTGCGTTTGCGAGGTGG 86622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500162477683840