Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq148 165 1e-35 >seq148 Length=545759 Score = 165 bits (182), Expect = 1e-35 Identities = 591/914 (65%), Gaps = 25/914 (3%) Strand=Plus/Plus Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145 |||||| | || | || || ||||| || ||||| |||||||| ||||| ||||| | Sbjct 220381 CGCGATTTGTTTTATGCCCTATGGATACCGGATCTGTTCATGAAAAGAGTAGAGGATGAT 220440 Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAG 112205 ||| |||||||||| | ||||| | || || ||| | | || | ||| || Sbjct 220441 GGCGATTGGTCTCTAATGTGTCCTCATAAATGTCCTGGTTTGTGTGAAGTTTGGGGAGAT 220500 Query 112206 GAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGG----GCGACTGCGACGGT 112261 || ||||| | |||| || ||||| ||| || || |||| | || | Sbjct 220501 GAATTTGACAAATTATACATGAAATACGA--AAGTGAG--GGCAAAGCGAATCAAACAAT 220556 Query 112262 GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 112321 |||| | ||||| || || |||||||||| | |||||||| || || || Sbjct 220557 TAAAGCTCGTGCCTTGTGGTTTGCAATATGCAAGTCTCAAGCGGAGACTGGAACTCCTTA 220616 Query 112322 TATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 112381 ||||||||||||||| || || || | |||||||||||| |||| | ||| || || Sbjct 220617 TATGCTTTACAAAGATGCTTGCAATCGCAAGAGTAATCAACAGAACATTGGTACTATAAA 220676 Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 112441 | ||| | ||||||||||| | |||| || ||||| | || || || Sbjct 220677 ATCTAGTAACTTGTGTACAGAAATTGTCGAATACACTTCGGCTGATGAAATTGCAGTTTG 220736 Query 112442 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTA 112501 ||||| || || || || | || || ||| | | || | ||| || |||| Sbjct 220737 CAACCTGGCCTCGATTGCATTAAACATGTTCGTGACTACGGATAAAAA---ATACGATTT 220793 Query 112502 TGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAG 112561 | | ||| | | ||||||||||| | | |||| ||||| |||| | | ||||| | Sbjct 220794 TAACAAATTGAAAGAAGTTACGAAGCTTATAACAAGGAACCTCAACAAAATAATTGACAT 220853 Query 112562 AAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 112620 || | ||| |||||| | || | ||||||| || | ||||||||||||||| Sbjct 220854 TAACTATTA-TCCGTTGCCGGAAGCCAAAAGATCTAATTTGCGTCACCGTCCAATTGGTA 220912 Query 112621 TCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACG 112680 | || |||||||| | || || | ||| ||| | || | ||| ||| ||| Sbjct 220913 TAGGCGTCCAAGGATTTGCTGACGCATTAATTTTAATGCGTTATCCATATGAAAGCGAAA 220972 Query 112681 AAGC----GAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAG 112736 | || | ||||||| | || || || || || ||| ||| ||| | ||| Sbjct 220973 ATGCTGTTCTATTAAATCAA----CAAATTTTCGAAACCATATATTACGGTGCTTTAGAG 221028 Query 112737 GCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 112796 || || | |||||||| | |||| || || ||||| | ||| ||| |||| | Sbjct 221029 GCTAGCTGTGAGTTGGCCAAACAATATGGCCCGTACGAAACATATGAAGGTAGCCCAGTT 221088 Query 112797 TCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGACT 112854 |||| | ||||||| ||| |||| |||| || || | || || | || | Sbjct 221089 AGCAAAGGTATTCTTCAATATGACATGT-GGAACAAGAAGCCTA-CTGATCTTTGGGATT 221146 Query 112855 GGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 112914 ||| ||||| || || |||||| | | ||| | ||||| | | ||| |||| | Sbjct 221147 GGGCGGCTCTTAAAGATGACATCAAAAATCATGGTGTGCGTAATTCTTTGTTGGTGGCCC 221206 Query 112915 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACA 112974 ||||||| || || || || || ||||| | || || || |||| |||||| || || | Sbjct 221207 CAATGCCTACGGCATCTACTGCTCAAATTCTTGGCAACAACGAATCCTTTGAGCCGTATA 221266 Query 112975 CGACGAACATCTAT 112988 | | ||| | ||| Sbjct 221267 CTTCAAACGTTTAT 221280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620729589428720