Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq148 122 1e-22 >seq148 Length=545759 Score = 122 bits (134), Expect = 1e-22 Identities = 469/723 (65%), Gaps = 23/723 (3%) Strand=Plus/Minus Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993 ||| | ||| | || || || |||||| |||| || || || | ||||| || || || Sbjct 221280 ATAAACGTTTGAAGTATACGGCTCAAAGGATTCGTTGTTGCCAAGAATTTGAGCAGTAGA 221221 Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTC 106053 || || |||||||| |||| ||| | | ||||| | ||| | | |||||| || Sbjct 221220 TGCCGTAGGCATTGGGGCCACCAACAAAGAATTACGCACACCATGATTTTTGATGTCATC 221161 Query 106054 CTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGA 106111 || ||| | |||| || | | | || | || ||| |||| |||| ||| ||||| Sbjct 221160 TTTAAGAGCCGCCCAATCCCAAAGATCAG-TAGGCTTCTTGTTCC-ACATGTCATATTGA 221103 Query 106112 AGCACCCCTTGGG-ACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGC 106170 || | |||| | | |||| | || ||| |||| || || | || | || || Sbjct 221102 AGAATACCTTTGCTAACTGGGCTA-CCTTCATATGTTTCGTACGGGCCATATTGTTTGGC 221044 Query 106171 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 106230 ||| |||||||| ||||| | | ||| ||| |||||||| || || | || || Sbjct 221043 CAACTCACAGCTAGCCTCTAAAGCACCGTAATATATGGTTTCGAAAATTTG----TTGAT 220988 Query 106231 CTCCTTG----GCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGA 106286 | | | || | || ||| ||| || || ||||| ||| | || || | Sbjct 220987 TTAATAGAACAGCATTTTCGCTTTCATATGGATAACGCATTAAAATTAATGCGTCAGCAA 220928 Query 106287 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCT-C 106344 ||||| || || | |||||| || | ||| |||| |||||| |||| | || | | Sbjct 220927 ATCCTTGGACGCCTATACCAATTGGACGGTGACGCAAATTAGATCTTTTG-GCTTCCGGC 220869 Query 106345 AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGAT 106404 ||||| |||| | || ||||||| | | ||| || || | || | || ||| || | Sbjct 220868 AACGG-ATAATAGTTAATGTCAATTATTTTGTTGAGGTTCCTTGTTATAAGCTTCGTAAC 220810 Query 106405 TTCATGAAGTTTTTCATAATCAAAAGTGCGAGTC-TCTTCATTGACATACTTTGGAAGGG 106463 ||| | | ||| | | |||| | | | | | ||| |||| || | | Sbjct 220809 TTCTTTCAATTTGTTAAAATCGTATTTTTTATCCGTAGTCACGAACATGTTT----AATG 220754 Query 106464 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 106523 | || || |||| |||||||| || | ||||| ||||| || | |||||||| Sbjct 220753 CAATCGAGGCCAGGTTGCAAACTGCAATTTCATCAGCCGAAGTGTATTCGACAATTTCTG 220694 Query 106524 TACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACG 106583 |||||||||| | || || || || | |||| ||| |||||||| ||||| | Sbjct 220693 TACACAAGTTACTAGATTTTATAGTACCAATGTTCTGTTGATTACTCTTGCGATTGCAAG 220634 Query 106584 CATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCC 106643 |||| ||||| ||||| || || || || ||||||| || |||||| ||||| || Sbjct 220633 CATCTTTGTAAAGCATATAAGGAGTTCCAGTCTCCGCTTGAGACTTGCATATTGCAAACC 220574 Query 106644 ACA 106646 ||| Sbjct 220573 ACA 220571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589968624271240