Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_014900.1 Length=40986 Score E Sequences producing significant alignments: (Bits) Value seq556 376 7e-100 seq439 205 2e-48 >seq556 Length=23517 Score = 376 bits (416), Expect = 7e-100 Identities = 958/1438 (67%), Gaps = 36/1438 (3%) Strand=Plus/Minus Query 31083 AATGCCGATTCAACAACTCCCCATGATGAAGGGAATGGGTAAAGACTTCAAGAATGCCGA 31142 |||| |||| ||| | ||| |||| || || | ||||||| | | | ||||| Sbjct 8531 AATGGCGATAATGCAATTACCCCTGATAAAAGGTCTCGGTAAAGCGCGCGATGACGCCGA 8472 Query 31143 CTACATTGATTACCTACCAATCAATATGTTGGCCACACCGAAAGAAGTCCTCAACTCATC 31202 || || || | | || |||||||| |||| || || || || | || | Sbjct 8471 TTATATCGACGCCTTGCCGGTCAATATGCTGGCTACGCCCAAGCCGGTATTGAATGCCAG 8412 Query 31203 GGGTTATTTACGCTCATTCCCCGGCATAGC--GAAGCGCAACGATGTAAATGGTATATCG 31260 |||||| ||||||| || ||||| || || | | ||| || || || | || Sbjct 8411 CGGTTATCTACGCTCGTTTCCCGGTATTGCCCGCAAAGCA--GAGGTCGCCGGGGTGTCC 8354 Query 31261 CGTGGTGTTGAATACAACACCGCTCAGAACGCTGTATATCGCGTTTTAGGCAGTAAGCTC 31320 || || ||| | ||||| ||| | | || | || ||||||| | || | | | | Sbjct 8353 CGAGGCGTTCAGTACAATACCCATGAAAAGACGGTTTATCGCGGGCTGGGAAATCAATTA 8294 Query 31321 TACAAAGGGGA--AACCGTAGTAGGTGATGTAGCCGGAAGCGGTCGCGTATCA--ATGGC 31376 |||||||| | ||||| ||| ||| | || |||| |||||| |||| ||||| Sbjct 8293 TACAAAGGCCATAAACCGA--TAGCGGATATTGCTGGAAAGGGTCGC--ATCAGCATGGC 8238 Query 31377 ACATGGTCGCACATCACAGGCGGTAG--GCGTTAATGGTCAACTGGTCGAGTATCGCTAT 31434 | | |||| |||||||||| ||| | || || || || || || Sbjct 8237 GTTTAGCCGCAACAGTCAGGCGGTAGCAGCGGCA--GGAAAAATGACGCTCTACCGTTAC 8180 Query 31435 GATGGCACGGTTAAAACCGTCTCAAACTGGACTGCAGACAGCGGATTCACGCAGTATGAG 31494 ||||||||||| ||||| | ||||||| | ||||| || |||||| || || Sbjct 8179 GATGGCACGGTAAAAACACTGGAAAACTGGCCGAAAGACAAAAAATACACGCAATACGAT 8120 Query 31495 TTAGGCTCAGTCCGTGACATTACGCGCTTACGTGGGCGTTATGCGTGGTCAAAAGACGGC 31554 | || | || || || || | || || || ||||||| |||| ||||||||| Sbjct 8119 ATTGGTACCGTGCGGGATATGTGCCATTTGCGCGGACGTTATGTCTGGTGTAAAGACGGC 8060 Query 31555 ACTGATTCATGGTT--TATCACTGACCTCGAAGATGAGTCGCATCCTGACCGCTACAGTG 31612 || ||| || || | |||| || | |||||||| || || |||||||||||| | | Sbjct 8059 ACCGAT--ATTTTTGGTGTCACCGATTTGGAAGATGAATCTCACCCTGACCGCTACCGCG 8002 Query 31613 CAGAATATCGCGCAGAATCGCAGCCAGACGGCATCATTGGCATCGGAACGTGGCGAGACT 31672 | |||||||| ||||| || || |||||||| || || || | | ||||| || | Sbjct 8001 CGCTGTATCGCGCCGAATCACAACCCGACGGCATTATCGGTATTGATAGCTGGCGCGATT 7942 Query 31673 TTATCGTTTGCTTTGGTTCATCGACGATAGAGTATTTCTCCCTGACAGGCGCAACCACCG 31732 |||| || |||||||| | || || || || ||||| |||||||| || || || || Sbjct 7941 TTATTGTCTGCTTTGGCGCGTCCACCATTGAATATTTTTCCCTGACCGGGGCGGCCGACG 7882 Query 31733 TTGGCGCTGCGT--TGTATGTCGCGCAGCCATCGTTAATGGTACAGAAGGGCATTGCCGG 31790 ||| | || | |||| ||| ||||| | | ||||| |||| ||||||||||| Sbjct 7881 --GGCAATCCGCCATCTATGCCGCACAGCCTGCACTCATGGTCGAGAAAGGCATTGCCGG 7824 Query 31791 AACATACTGTAAAACGCCATTCGCTGATTCATATGCATTCATCAGTCACCCAGCTACTGG 31850 || |||| || || | ||| ||| | ||| ||||||| || | || || || Sbjct 7823 GACCCACTGCAAGACCCGGCTCGGCGATGCTCATGTGATCATCAGCCATCAGGCCACCGG 7764 Query 31851 CGCACCTTCCGTCTACATCATCGGGTCAGG-GCAGGCTTCACCAATTGCGACGGCCAGTA 31909 ||| || || || ||| | || ||||| |||||| || | ||||| ||||||| | Sbjct 7763 CGCGCCGTCGGTATACCTGATTAA-TCAGGCGCAGGCGACATCGATTGCCACGGCCACCA 7705 Query 31910 TTGAGAAAATTATCCGCTCATACACGGCTGATGAACTGGCAACCGGGGTGATGGAGGCGT 31969 | ||||||||| | ||| ||||| ||||||||||| | || || ||||| | Sbjct 7704 TCGAGAAAATTCTACGCAGCTACACACACGATGAACTGGCGAGCGCCGTCATGGAAACCG 7645 Query 31970 TGAGGCTCGATTCGCATGAACTGCTGATTATCCATCTCCCGCGTCATGTGCTGGTTTACG 32029 | | |||| || ||| | || |||||||| | ||||| || ||| || ||| | Sbjct 7644 TCCGTTTCGACAGCCACGAATTAGTGCTTATCCATTTGCCGCGACAGGTGTTGTGTTATG 7585 Query 32030 ATGCCTCATCAAGCCAGAACGGGCCGCAATGGTGCGTACTGAAAACCGGTTTATACGACG 32089 | ||| | | | ||||||||||||||||||| || | |||||||| || || || ||| Sbjct 7584 ACGCCGCGGCCAACCAGAACGGGCCGCAATGGAGCCTGCTGAAAACGGGCTTTTATCACG 7525 Query 32090 ATGTTTATCGCGCCATCGATTTCATGTACGAAGGCAACCAGATTACGTGTGGCGACAAGT 32149 | ||||||| ||||||||| |||| | | | | || | || |||||||| || Sbjct 7524 CTCCCTATCGCGGCATCGATTTTATGTTTGCCGACCATCACCTCACCTGTGGCGATAAAC 7465 Query 32150 CAGAAGCGGTGACAGGGCAGTTGCAATTCGACAT-TAGTAGTCAGTACGACAAGCAGCAA 32208 || || | || || | | || | ||| | | || || || || | ||| Sbjct 7464 ACGATGCCCTCCTCGGCCAACTTGATTTTG-CATCTTCTGCGCAATATGAAAAACCGCAG 7406 Query 32209 GAACATCTGCTGTTTACTCCCATCTTCAAGGCTGATAACGCCAGATGCTTCGATCTGGAA 32268 || ||| | || | ||| || | |||||||| ||||| ||| | || ||| | ||| Sbjct 7405 GAGCATGTTCTCTATACCCCGCTTTTCAAGGCAGATAATGCCCGCGTATTTGATTTTGAA 7346 Query 32269 GTTGAATCCTCGACAGGCGTTGCGCAGTACGCTGACCGCCTGTTCCTGTCTGCAACCACA 32328 | || | || || ||||| ||||| ||| |||||||| ||||| || || ||| | Sbjct 7345 CTGGAGGCATCAACCGGCGTGGCGCACATCGCCGACCGCCTCTTCCTCTCCGCCACCGCC 7286 Query 32329 GACGGAATCAATTACGGCCGCGAACAGATGATTGAGCAGAATGAGCCGTTTGTGTACGAC 32388 ||||| || ||| |||||||||||||||||| | || |||| |||||||| ||| ||| Sbjct 7285 GACGGCATGCATTTTGGCCGCGAACAGATGATTAACCAAAATGCGCCGTTTGCGTATGAC 7226 Query 32389 AAGAGAGTTTTATGGAAGCGTGTAGGTCGTATTCGTC-GATTAA---TCGGATTCAAACT 32444 || || || | ||| ||| ||| | | | || || || |||| || ||| | Sbjct 7225 CAGCGAATTCTCTGGCGGCG----GGTTGGCTACATCAGAAAAAATGTCGGCTTTAAAGT 7170 Query 32445 GCGGGTAATCACCAAATCACCAGTAACACTATCCGGGTGTCAAATTCGTCTGGAGTAA 32502 ||||| |||||| ||| || || || || ||||| ||||| || | |||| ||| Sbjct 7169 ACGGGTGATCACCTCATCGCCCGTGACGCTCTCCGGTTGTCAGATAAGGATGGAATAA 7112 Score = 178 bits (196), Expect = 3e-40 Identities = 271/386 (70%), Gaps = 0/386 (0%) Strand=Plus/Minus Query 35160 GCTGACAGACAGGCCGCCGCTCAGGGAGCTGTTGATACGTTCAGCACTGCGCTTGATTCT 35219 |||||||| ||||| |||| ||| ||||| |||||||| | || || || | ||| Sbjct 4680 GCTGACAGGCAGGCGATGGCTCGGGGGGCTGTCGATACGTTTAATACCGCACTGCAATCT 4621 Query 35220 CTCAACGAGATAGAGCAAAGCCCCGGTCTTTCAAAAGCAGTAGGCATTCGCTCAGCGTTT 35279 || || | ||| |||||| || | |||||||| || || ||| ||| Sbjct 4620 CTTTCAGAACTGGAGGCAAGCCCTGGATTGTCAAAAGCCGTTAGCTACAAATCATTATTT 4561 Query 35280 CCGACAGTTCCTGGCTCTGATGCGGCTAACTTTGAAGCAAGACTCGACACCTTTAAAGCT 35339 |||||| | || ||| ||| || || ||||||||||| | || || || || || ||| Sbjct 4560 CCGACATTCCCCGGCAGTGACGCAGCAAACTTTGAAGCGCGCCTGGATACATTCAAGGCT 4501 Query 35340 CAAACTTTCCTTCCTATGGTGCAGTCACTGAAGGGGATGGGCGCTCTTTCAGATGCTGAG 35399 || || ||||| || |||||||||||| ||||||| ||||| || || || || || || Sbjct 4500 CAGACATTCCTGCCCATGGTGCAGTCAATGAAGGGCATGGGTGCCCTGTCTGACGCGGAA 4441 Query 35400 GGTAAAAAATTATCCGATGCGGTTGGTGCCCTAAGCCCCAAAATGAGTGAAAAGGCTTTT 35459 || ||||| | |||||||||| || || || | ||||||||||||||| ||| || Sbjct 4440 GGCAAAAAGCTCACCGATGCGGTGGGCGCGCTCAATCCCAAAATGAGTGAATCGGCGTTC 4381 Query 35460 CGTGAATCTATCGGAAAGATTAGAAATCAGCTTGAAAGCAAGTTGAGCACTGTTAAAAAA 35519 | | ||| || ||| || | |||||||| |||| || | ||||||| Sbjct 4380 AGGGCATCCATGGGACGCATCCGCCGCGAGCTTGAAGGCAAATTACACGCTGTTAAGCGT 4321 Query 35520 CAGTTTGATTATCAGGAGCCGGTGCA 35545 || ||||||||||| || || | ||| Sbjct 4320 CAATTTGATTATCAAGATCCCGCGCA 4295 >seq439 Length=76666 Score = 205 bits (226), Expect = 2e-48 Identities = 661/1018 (65%), Gaps = 40/1018 (4%) Strand=Plus/Minus Query 15821 GTTGGTGGTTTTGCTTATATCGCTGAGATCGCAAAGAACACGCCAAGCGCAGCAAACGTC 15880 |||||||| ||||| || | || |||| ||| ||| ||||| || ||| | Sbjct 62021 GTTGGTGGATTTGCCTACCTGATGGAAATCGTCAAGTTCACCCCAAGTAGTGCCAACATG 61962 Query 15881 GTTGCCTATGCAATGCG-GGTTCGCGAAACAGCAATGGAACGCTACGCCATCA--ACCGC 15937 || || ||||| |||| |||||| || | || ||||| ||||||| ||| || || Sbjct 61961 GTCGCTTATGCC-TGCGTGGTTCGTGATTCCGCCATGGAGCGCTACGGGATCGCTACAGC 61903 Query 15938 ATGACTGAAGCGACGGAATTGCTCTATTCCCGCAACGGGATGACTGCAACGCAGAAGTAC 15997 | | || || | ||| | ||| |||||||||| |||| ||| | |||| Sbjct 61902 AAACCAGATA--ACCGCGTTGTTGTATGCCCGCAACGGTATGAGCACAAGAGAAAAGTTT 61845 Query 15998 GAAGCTATTCAGGCGATTTTCACGCAACTGACAGACCATGCAAAAACCGGATCGCGTCGC 16057 ||| | || || || | || | || | || || || | ||||| || |||||| Sbjct 61844 GAATCAATCCAAACGTTGTTTAGCGAAATTACCGATCACGTCAAAACGGGTAAGCGTCGA 61785 Query 16058 GGCCTTCGCTCATTTGGTGAGGTTATGGAAGATTGGGTCAGCGACCTTGAGAAGCGATTT 16117 || | || | || || || |||| |||||| | ||| | || |||| ||| Sbjct 61784 GGTGCGAGGCCACTAGGGGACGTGATGGCTGATTGGCTTGACGAAGTAGATCAGCG-TTT 61726 Query 16118 GACCCATC--AGGCGAACAACGAGGAATGAGCACAGGGATCTCATCGTTGGACAGGATGC 16175 | || | || || | ||||||| || || |||||| | ||| | || | | Sbjct 61725 CAGTGATACTACTCGGACTA-GAGGAATTAGAACGGGGATCCCGTCGCTAGATGAACTTC 61667 Query 16176 TGTCACCGAAAGGTCTGGTAAAAGGCTCTCTGTTCGTCATTGGCGCTCGCCCTAAGATGG 16235 | ||| || || ||||| || || ||| | ||||| || ||||| || || |||| Sbjct 61666 TCCAACCCAAGGGACTGGTTCGTGGTTCGCTGATGGTCATCGGTGCTCGTCCCAAAATGG 61607 Query 16236 GGAAAACGACGCTATACAGCCAGATGGCAATCAACTGCGCAGTGCATGAGAAAAAGCCGG 16295 | || || ||| | ||| || |||| | || ||||| |||| || || ||| | Sbjct 61606 GCAAGACAACGTTGTACTCACAATTGGCTCTTAATTGCGCCTTGCACGAAAATTTGCCTG 61547 Query 16296 CCCTGATGTTCAGCCTTGAAATGCCAGGTGACCAGATACTGGAAAAACTGGTAGGGCAGA 16355 || | ||||||||||||| ||||||| | || ||| | || || | || ||| Sbjct 61546 CCGTACTGTTCAGCCTTGAGATGCCAGACAAGCAAATATTCGAGCGCATGATCGGCCAGT 61487 Query 16356 AGTCAGGTGTTAACCCAAATATTTTTTACCTTCCGGCGACAAATGACGCTGATGACGGCT 16415 ||||| | || | ||||||||||| | ||| | |||| ||| || | Sbjct 61486 CATCAGGAATCAATACTGATATTTTTTACTGT--GGC----ACTGACAACGATAGCGATT 61433 Query 16416 ATCAGGGTGATTACGATGGTGACTTCAACAGGGCGATCGAAACAGCCAATCGCTTGAGTG 16475 || | | || | ||| | | || | |||| || || Sbjct 61432 -TC--GCTTATGCCAATGCTAAA---------GCATTGGAAA------------TGGTTG 61397 Query 16476 AAATCGACCTGCTTTACATCGACGACACGCCGGGATTATCTCTGGCTCAAATCATCAGCG 16535 || || | |||| | | || ||||| |||||| ||| || |||||| | Sbjct 61396 AATCCGGCAATCTTTTCGTTGATGACACACCGGGAGCCAGTCTAAGCCATATCATCGCAG 61337 Query 16536 AAAGCCGTCGAATCAAGCGAGAAAAAGGATGTGTTGGCATGATTCTGGTCGATTACCTGA 16595 |||||||| | || ||||| || || || || ||| | |||||||||||||||| Sbjct 61336 AAAGCCGTAGGATTAAGCGTCAATGCGGTAAGGTAGGTATGGTGCTGGTCGATTACCTGA 61277 Query 16596 CACTAATGACCGCTGAAAAGGCCGATCGTAACGACCTTGCTTACGGCATGATTACTAAGG 16655 | || ||| || || || ||||| || |||||| | || ||||| || || || |||| Sbjct 61276 CGCTTATGCGGGCAGAGAAAGCCGACCGCAACGACTTGGCGTACGGGATTATAACCAAGG 61217 Query 16656 GACTGAAGAACCTTTCCAAAGAGCTTGATTGCGTTGTTGTGCTTCTGACGCAGCTTAACC 16715 |||| ||||||||| |||| |||||||||||| |||| ||||| || || ||| | |||| Sbjct 61216 GACTCAAGAACCTTGCCAAGGAGCTTGATTGCATTGTGGTGCTGCTAACACAGTTAAACC 61157 Query 16716 GCGCACTGGAAAGCCGAACCAATAAACGCCCATTACCAAGCGACTCCCGAGATACAGGGC 16775 ||| || || | || || |||||||| ||||| ||| | ||||||| || | Sbjct 61156 GCGACCTTGAGAAACGTGTTAACAAACGCCCCCAGCCAAGTGACAGCAGAGATACTGGCC 61097 Query 16776 AGATTGAACAGGATTGCGATTATTGGGTTGGTATCCATCGTGAAGGTGCTTTTGATGA 16833 |||||||||| || || ||||| ||| | || ||| | || |||||||||| ||| || Sbjct 61096 AGATTGAACAAGACTGTGATTACTGGCTGGGGATCTACCGGGAAGGTGCTTATGACGA 61039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131031031004376