Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 150 4e-31 seq53 145 2e-29 seq308 127 5e-24 >seq1 Length=10097680 Score = 150 bits (166), Expect = 4e-31 Identities = 158/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || ||||| || ||||||||||| | | ||| | ||||||||| | || || || Sbjct 7547585 GTCGATTCTTTCTGTATATTGTAATCAGACAAAGTCCGCCCATCTTCCAATTGTTTGCCA 7547526 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| | ||||| || |||||||||||||| |||||||| |||||||| |||| Sbjct 7547525 GCGAAGATCAAACGTTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGAATTTTGGCCTTG 7547466 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||| ||||| ||| || ||||| | |||| || || || || | |||| Sbjct 7547465 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATTGTTTTGCCAGTAAGAGTT 7547406 Query 195124 TTTACGAACACTTGCATTTATGGTTACT 195151 || ||||| | |||||||| || || || Sbjct 7547405 TTAACGAAAATTTGCATTTTTGCTTTCT 7547378 >seq53 Length=1361919 Score = 145 bits (160), Expect = 2e-29 Identities = 164/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | || | ||| || ||||| || |||||||| || | ||||| | Sbjct 1240435 GAGACGCAACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCGAGAGAGTACG 1240376 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || ||||| ||||| || || || ||||| | || || |||||||||||||| ||||| Sbjct 1240375 ACCGTCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTC 1240316 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||| |||||||||||| ||| ||||| || || || ||||| ||| || || | || Sbjct 1240315 TTTATCTTGAATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTTCTACCTCCAAAGT 1240256 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || || || ||||||||||| || || | ||||||| Sbjct 1240255 AATGGTTTTGCCAGTCAAAGTTTTAACAAATATTTGCATT 1240216 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||| ||||| |||||||| || ||||||| ||||| | |||||||| | || Sbjct 1234438 TGGAGAGTAGACTCCTTTTGAATGTTATAATCGGAGAGAGTACGGCCATCTTCCAATTGT 1234379 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| |||||||| | || || |||||||| ||||| ||||| || || || || || Sbjct 1234378 TTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTTA 1234319 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||||| |||||||| || ||| || ||||| | || | || || || ||| Sbjct 1234318 GCTTTGACGTTTTCAATGGTATCGGAAGGCTCGACTTCCAAAGTGATGGTTTTACCGGTC 1234259 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 |||||||| ||||| | |||||| Sbjct 1234258 AAAGTTTTGACGAAGATTTGCAT 1234236 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| | || || |||||||| ||||||||||| | | || | ||||||||| Sbjct 1232553 AACCAAGTGCAATGTTGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCATCTTC 1232494 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || || || || || ||||| | || || || || |||||||| |||||||||||||| Sbjct 1232493 CAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGAATACCTTCTTTGTCTTG 1232434 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || ||| || || || ||||| || || || ||||||||| | || | || || Sbjct 1232433 GATCTTTGCTTTTACATTTTCAATTGTATCAGATGGTTCCACTTCTAAAGTGATTGTTTT 1232374 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || ||||| || |||||||| | |||||||| Sbjct 1232373 GCCAGTCAATGTCTTTACGAAGATTTGCATTT 1232342 Score = 129 bits (142), Expect = 1e-24 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| || ||||| || ||||||||||| | |||||| | || ||||| | || || || Sbjct 1241532 AGTTGATTCTTTCTGTATATTGTAATCCGAAAGAGTGCGACCGTCTTCTAATTGTTTGCC 1241473 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || ||||| | || || || ||||||||||| |||||||| |||||||||||| || Sbjct 1241472 AGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTATCTTGAATTTTTGCTTT 1241413 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||||| || || || || || ||| || || | |||| | || || |||||||| Sbjct 1241412 AACGTTTTCGATAGTATCTGATGGTTCTACCTCCAAAGTAATGGATTTGCCAGTCAAAGT 1241353 Query 195123 TTTTACGAACACTTGCATT 195141 |||||| || | ||||||| Sbjct 1241352 TTTTACAAAGATTTGCATT 1241334 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || || ||||| | ||||||||| | |||||| | || ||||| | || || || Sbjct 1240185 GTAGATTCCTTTTGTACATTGTAATCCGAAAGAGTGCGGCCGTCTTCTAATTGTTTGCCA 1240126 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || | || || || ||||||||||| |||||||| |||||||||||| || Sbjct 1240125 GCAAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTATCTTGAATTTTTGCTTTA 1240066 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| || || || ||||| ||| ||||| | |||| || ||||| ||||||||| Sbjct 1240065 ACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTAATGGTTTTTCCAGTCAAAGTT 1240006 Query 195124 TTTACGAACACTTGCAT 195140 || || || | ||||| Sbjct 1240005 TTAACAAAGATCTGCAT 1239989 Score = 120 bits (132), Expect = 7e-22 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || || ||||| ||||||||||| | | || | ||| ||||| ||||| ||||| Sbjct 1239729 GTAGATTCCTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTCTAGCTGTTTACCA 1239670 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||| || | |||||||| ||||| || || ||||| || |||||||| || || Sbjct 1239669 GCGAATATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCTTGAATCTTAGCTTTA 1239610 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || |||||||| || || ||| || || || | ||| || || || || ||||| || Sbjct 1239609 ACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGACAGTTTTCCCAGTCAATGTC 1239550 Query 195124 TTTACGAACACTTGCATTT 195142 || ||||| | ||||||| Sbjct 1239549 TTCACGAAGATCTGCATTT 1239531 Score = 116 bits (128), Expect = 8e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || ||||| || || |||||||| | ||||| | |||||||| | || ||||| Sbjct 1239957 GTTGATTCTTTCTGTATGTTGTAATCCGAGAGAGTGCGACCATCTTCCAATTGTTTACCA 1239898 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| | || || |||||||| ||||| ||||| || ||||| || || || Sbjct 1239897 GCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGGATCTTAGCTTTA 1239838 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| |||| ||||| ||| || || || | |||| || || || ||||||||| Sbjct 1239837 ACGTTTTCAACAGTGTCGGAAGGCTCTACCTCCAAAGTAATGGTTTTGCCAGTCAAAGTT 1239778 Query 195124 TTTACGAACACTTGCAT 195140 || || || | |||||| Sbjct 1239777 TTAACAAAAATTTGCAT 1239761 Score = 114 bits (126), Expect = 3e-20 Identities = 151/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || |||||||| ||||| ||||||| ||||| | ||| ||||| | || Sbjct 1241765 TGGAGTGTTGATTCTTTTTGGATATTTTAATCGGACAGAGTGCGCCCGTCTTCCAATTGT 1241706 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| | || ||||| || |||| ||| ||||| || ||||| |||||| Sbjct 1241705 TTGCCAGCAAAGATCAAACGCTGTTGATCGGGAGAAATACCTTCCTTATCTTGGATTTTT 1241646 Query 195058 TGCTTGA--CGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 |||| | |||| || || || ||||| || || || | |||| || || || | Sbjct 1241645 -GCTTTAACCGTT-TCGATAGTATCCGACGGCTCTACCTCCAAAGTAATAGTTTTGCCAG 1241588 Query 195116 TCAAAGTTTTTACGAACACTTGCATT 195141 |||||||||| || || | ||||||| Sbjct 1241587 TCAAAGTTTTAACAAAGATTTGCATT 1241562 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || || ||||| ||||||||||| | | || | ||| ||||| | ||| ||||| Sbjct 1232768 GTAGATTCCTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTCTAACTGTTTACCA 1232709 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| | || ||||| ||||| || || ||||| || |||||||| || ||| Sbjct 1232708 GCGAAGATTAAACGCTGTTGATCTGGTGGGATTCCTTCCTTATCTTGAATCTTAGCCTTA 1232649 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || |||||||| || || ||| || || || | ||| | || || || ||||| || Sbjct 1232648 ACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATAGTTTTGCCAGTCAATGTC 1232589 Query 195124 TTTACGAACACTTGCAT 195140 || || || | |||||| Sbjct 1232588 TTGACAAAAATTTGCAT 1232572 >seq308 Length=190705 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| ||||| || | ||||| |||||||||||||| ||||| | | || | ||||| Sbjct 86636 CAACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCGATAATGTGCGACCATC 86695 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | || || || |||||||| | |||||||||||| || ||||| || |||||||| Sbjct 86696 TTCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTGGAATTCCCTCTTTGTC 86755 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||| || || || || ||||| || || || || || ||||| |||| || Sbjct 86756 CTGAATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGACCTCAAGAGTAATGGT 86815 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || | |||||||| || | ||||| Sbjct 86816 CTTGCCCGTAAGGGTTTTTACAAAAATCTGCAT 86848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109458130650317