Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_016165.1 Length=39283 Score E Sequences producing significant alignments: (Bits) Value seq550 150 5e-32 >seq550 Length=29371 Score = 150 bits (166), Expect = 5e-32 Identities = 737/1153 (64%), Gaps = 45/1153 (4%) Strand=Plus/Minus Query 16629 TGATCGAGGCGATCAAGGCCGAACTGACGACGAACGTCCGGCTGCAGTGCGATTTTCCTG 16688 || |||| || ||||||||||| ||| ||| |||||||| | || || || | Sbjct 17285 TGCTCGAAGCCATCAAGGCCGAGCTGGAATTTAACCCCCGGCTGCTGGCTGACTTCCCCG 17226 Query 16689 ACGCATTCGGCCAGGGGCGCCTGTGGCGCGAGGGCGAGATCGTCACGCGCAACAACATCC 16748 | || | ||| || ||| | |||| |||| ||| | ||||||||| | || | Sbjct 17225 AAGCCTGCGGGGTAGGCCGCGTCTGGCAGATGGGCACCATCCTGACGCGCAACGATATGC 17166 Query 16749 GCGTCGAAGGCCTGGGCGC---CGCCAAGAAGATCCGTGGCCGCCGTCATGGCCCGTATC 16805 | | ||| ||| || || || ||| | || |||| || || || ||||| | Sbjct 17165 AAGGTGCAGG--TGGCCGGTAGCGGTAAAAAGCTGCGCGGCCTGCGCCACGGGCCGTACC 17108 Query 16806 GGCCCGATCTGCTGTTCCTGGACGACATCGAGAACGACGAACAGGTGCGCAGCCCCGAGC 16865 | || || ||| || | |||||||| || ||||||||||| |||||||||| ||| || | Sbjct 17107 GCCCTGACCTGGTGATACTGGACGATATTGAGAACGACGAGCAGGTGCGCAACCCGGACC 17048 Query 16866 AGCGCACCAAGCTTTGGAA--CTGGATCTATCGCGCCGCGCTGAAGGTCGGCCCGCCCGA 16923 ||||| ||| || |||| |||| | ||| |||| | | ||| | | Sbjct 17047 AGCGCGACAAACT--GGAAAGCTGGCTGAGAAAAACCGTGCTGCCGCTGGGCGGTGCGGG 16990 Query 16924 CGGCAGCATGGATGTGATCTGGGTCGGCACGGTGTTGCACTTCGACGCCGT--TATCGTG 16981 || | | |||||| ||| ||||||| | |||| | |||| | || |||| Sbjct 16989 CGCAAAACTCGATGTGGTCTATATCGGCACCATCCTGCATTACGACTCGGTCTTATCA-- 16932 Query 16982 CGCGCCGCGAAGGCGCCCGGATGGCGCGTGACCGAGTTCCAGGCGGTGGTGAAGTTCCCC 17041 ||| || ||| || ||||| | | | | |||| || ||| || Sbjct 16931 CGCACCCTGAATAACCCATTGTGGCGACAGGCACGGCTTAAGGCCCTGCGCCAGTGGCCG 16872 Query 17042 G---ACCGGATGGACCTGTGGGACCGGTTCGAAGAGGTCTATCACAACGACGGCGAAGAC 17098 | ||| | | |||||||| | || || || | ||||| || || ||| Sbjct 16871 GTGAACCTGTCG---CTGTGGGAGACCTGGGAGCAGCGCTTGCGTAACGAGGGGGAGGAC 16815 Query 17099 GCGGCCAAGGCGTTTTACGAGGCGCGCAAGGCC--GAGATGGATCAGGGCGCGGTGGTCA 17156 ||||| |||| |||||| | || ||| || || ||||| | ||||||| |||| Sbjct 16814 GCGGCGCAGGCATTTTAC-ACCCG-GCACCGCGTGGAAATGGAAGATGGCGCGGAGGTCT 16757 Query 17157 ACTGGCCCTCGGTGCAGTCGCTGCTGTTCCTGATGCTGGAGCGCGCGGCCGACA---AAG 17213 |||| || | | |||||||| |||||||| ||||| ||| | | Sbjct 16756 CCTGGTCCGCCCGCC---CGCTGCTGACCCTGATGCATATCCGCGCCCGTGACGGTCACG 16700 Query 17214 CCGCCTTCCAGACCGAATATCAGAACCAGCCGATCAGCGAGGGGAAC-----CCGTTTGG 17268 || |||| | |||| || ||||| | ||| |||||| | ||| | ||||| Sbjct 16699 CCACCTTTGATGCCGAGTACCAGAATGACCCGGTCAGCG--GTGAAGATGCGCTGTTTGC 16642 Query 17269 CGATCTGACCT--ATT---GGGTGCAGCCGCTGCGGGAATGGATCTTCTTCGGCGCGATC 17323 | | ||| ||| ||| |||| | | ||| || ||| |||||| || || | Sbjct 16641 CCA-CTG-CCTGCATTTCTGGGTCAACCGGCTTAACGAGTGGGTCTTCTATGGGGCCTGC 16584 Query 17324 GACCCGAGCCTTGGCAAGGCTGGCAAGGGGCGCGACCCGTCAGCAATCCTGATCGGCGGC 17383 ||||| ||||| |||||||| || | || ||||||||||| | ||| |||| ||| Sbjct 16583 GACCCCAGCCTCGGCAAGGCCGGGGCCAGCCGTGACCCGTCAGCGCTGCTGGTCGGTGGC 16524 Query 17384 TTCGACCGGCTGGCCGGGAAGCTTGATGTGGTCGAAGCCTCGATCCGCAAGCGCCTGCCC 17443 || | || |||| ||| |||||||| ||||| ||| |||||||| ||||| Sbjct 16523 TTTAATCGCGCCACCGGCGTGCTGGATGTGGTGGAAGCGCAGATACGCAAGCGGCTGCCG 16464 Query 17444 GATCTGATCATCGCCGACACGATCGCCCTGCAGCGCGAATATCGGGCGCTGATGTGGTTC 17503 || || ||| | | | || || ||||| ||||||| ||| | ||| | Sbjct 16463 GACGCCATTATCAGCAATATTATTGCTCTGCAAAAGGAATATCACTGCCTGGTCTGGGGC 16404 Query 17504 GTTGAAACGGTTCAGTTTCAGGAGTTCCTGCGCACCGAGCTGATGACGCGGGCCGCCCGC 17563 |||| |||| |||||||||||||||||||||||||||||||| | ||| || || | Sbjct 16403 ATTGAGGCGGTGCAGTTTCAGGAGTTCCTGCGCACCGAGCTGATTAAGCGCGCGGCTCAG 16344 Query 17564 GATGGCGTTGGCATCTCGGC-CGTGCCGATCACGCCCTCGGCCGACAAGGACCTGCGCAT 17622 ||| | |||| || ||| || | ||| ||||||||| |||| || Sbjct 16343 CTGGGCCACCCGGTGCCGGCGCGGGCC-ATTATCCCCCATGCCGACAAGCTGTTGCGTAT 16285 Query 17623 CGAGCGCCTGCAGCCGCCGGTGGCTGCGGGGCTGATCCGGTTCAGCACCGCGCATCGCAC 17682 |||| ||||||||| | ||| ||||| |||||| | | || || ||| Sbjct 16284 CGAGACCCTGCAGCCCCATATGGAAAACGGGCTTATCCGGCTGCACGCCAGCCAGACCAC 16225 Query 17683 GCTGATTGACCAGCTGCAGCAATGGCCGAACGGCGATCACGATGACGGGCCGGATGCGCT 17742 ||||| | ||||||| || | | || ||| || || ||||| ||||| ||||| Sbjct 16224 CCTGATACAGCAGCTGCGCCATTTTTCCCGCGCCGACCATGACGACGGCCCGGACGCGCT 16165 Query 17743 CGACATGCTTTGG 17755 | ||||| ||| Sbjct 16164 GCATATGCTCTGG 16152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125581537847190