Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq184 318 7e-82 seq127 111 2e-19 >seq184 Length=525875 Score = 318 bits (352), Expect = 7e-82 Identities = 486/691 (70%), Gaps = 6/691 (1%) Strand=Plus/Minus Query 37010 ATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTAC 37069 |||||| ||| |||||||||||| |||||| ||||| || ||||| |||| || || Sbjct 28966 ATCCGCTACATATTCTATGTATTGACACATACTTTCATTATTCATACCGATTAAATTGAC 28907 Query 37070 TGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAAC 37129 ||| | || ||| |||||| ||||| ||| | || ||||| | | ||| | | Sbjct 28906 TGGTAGAGCTTCTGTCAGAAATTCCTTTTCAATTTTAACGGCATCGGTTATTATTTCCAA 28847 Query 37130 AATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAAAATCACA 37189 || ||||| || || | | | ||||||||||||| |||| ||||| || || Sbjct 28846 TATGCGTTCTTTGGTCGGTTTTTGTATCAAATATTTAAACATTAAAACCGCAAATTCGCA 28787 Query 37190 ATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACC 37249 ||||||||||||||| | ||| |||||||||||||| |||| || ||||||| || Sbjct 28786 ATGTAAACCTTCATCGCGTGATATTAATTCATTAGAAAATGTTAGACCCGGCATTATTCC 28727 Query 37250 TCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGC 37309 | ||| |||| ||||||||| | |||||| |||| |||||| |||||||| || || Sbjct 28726 ACGTTTCTTAAGCCAAAATATCGAAGCAAAACTTCCACTAAAGAATATACCTTCGACGGC 28667 Query 37310 TGCAAATGCTACAAGACGTGTACCGAAA---GTTGAACTATAATCAGAAATCCAtttttt 37366 ||||| |||| | ||| ||| ||| | |||| | || ||||| | Sbjct 28666 AGCAAAAGCTATGACACGCTCACCAAAATTCGCCGAACGCGA---TGATATCCAAGCTAA 28610 Query 37367 tGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGtt 37426 | ||| || || || |||||| | || || ||||| || || || ||| | | Sbjct 28609 AGCCCATTCCGCTTTCTTTTTAACTAACGGCATCGTCTCAATGGCATTAAAAAGATAATC 28550 Query 37427 tttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAAT 37486 ||||| ||||| ||| | || ||||| ||||||||||||||||| ||||| | Sbjct 28549 GCGTTCTTTCGGATCTGCGATAAATGTTTCAATAAGTAAACTATACATTTCCGAGTGTAC 28490 Query 37487 ATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTT 37546 |||||| || ||||| |||||||||||||| || | |||||| | || |||||| || | Sbjct 28489 ATTTTCGATGGCTATTTGAAAACCATAAAAGCAACGAGCTTCGGTTACTTGAACTTCTTG 28430 Query 37547 AAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAG 37606 | |||| | | |||| || |||||||| || || ||| || ||||| ||||| | Sbjct 28429 AGAAAAACGTTCCACTAAATTCTCATTAACAATGCCGTCAGATGCCGCAAAAAAAGCCAA 28370 Query 37607 AACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTT 37666 ||||| | |||||||| | |||||||| | |||| | ||||| || || |||| Sbjct 28369 AACATGTGAAATAAAATGACGTTCATCATCAGTTAATCGCTCCCAATGATCAAGATCTGC 28310 Query 37667 TGATAAATCAACTTCATCAACGGTCCAAAAA 37697 | | |||||| || || | ||||||||| Sbjct 28309 AGCGAGATCAACCTCTTCCGCCGTCCAAAAA 28279 >seq127 Length=755962 Score = 111 bits (122), Expect = 2e-19 Identities = 87/104 (84%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 153288 GGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCT 153347 || || ||||| |||||||| ||||| || |||||||| ||| | ||||| |||||||| Sbjct 123831 GGAGTATTACACACAAAATTGTGGATTGTGGATAATAAGCATTTTTATATTGGAAGTGCG 123890 Query 153348 AATATGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTAT 153391 ||||||||||||||||| |||||||||| || || ||||| || Sbjct 123891 AATATGGATTGGAGATCTTTAACTCAAGTCAAGGAGTTAGGGAT 123934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592304576062040