Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_017985.1 Length=40128 Score E Sequences producing significant alignments: (Bits) Value seq556 356 6e-94 >seq556 Length=23517 Score = 356 bits (394), Expect = 6e-94 Identities = 958/1441 (66%), Gaps = 42/1441 (3%) Strand=Plus/Minus Query 30645 AATGCCGATTCAACAACTCCCCATGATGAAGGGAATGGGTAAAGACTTCAAGAATGCCGA 30704 |||| |||| ||| | ||| |||| || || | ||||||| | | | ||||| Sbjct 8531 AATGGCGATAATGCAATTACCCCTGATAAAAGGTCTCGGTAAAGCGCGCGATGACGCCGA 8472 Query 30705 CTACATTGATTACCTACCAATCAATATGTTGGCCACACCGAAAGAAGTCCTCAACTCATC 30764 || || || | | || |||||||| |||| || || || || | || | Sbjct 8471 TTATATCGACGCCTTGCCGGTCAATATGCTGGCTACGCCCAAGCCGGTATTGAATGCCAG 8412 Query 30765 GGGTTATTTACGCTCATTCCCCGGCATAGC--GAAGCGCAACGATGTAAATGGTGTATCG 30822 |||||| ||||||| || ||||| || || | | ||| || || || || || Sbjct 8411 CGGTTATCTACGCTCGTTTCCCGGTATTGCCCGCAAAGCA--GAGGTCGCCGGGGTGTCC 8354 Query 30823 CGTGGCGTTGAATACAATACCGCTCAGAACGCTGTATATCGCGTTTTAGGCAGCAAGCTC 30882 || |||||| | ||||||||| | | || | || ||||||| | || | | | Sbjct 8353 CGAGGCGTTCAGTACAATACCCATGAAAAGACGGTTTATCGCGGGCTGGGAAATCAATTA 8294 Query 30883 TACAAAGGGGA--AACCG-TAGTCGGTGATGTAGCCGGAAGCGGTCGCGTATCA--ATGG 30937 |||||||| | ||||| ||| ||| || | || |||| |||||| |||| |||| Sbjct 8293 TACAAAGGCCATAAACCGATAG-CGG--ATATTGCTGGAAAGGGTCGC--ATCAGCATGG 8239 Query 30938 CACATGGTCGGACATCA--CAGGCGGTAT--GCGTTAATGGTCAACTGGTCGAGTATCGC 30993 | | | || || || ||||||||| ||| | || || || || || Sbjct 8238 CGTTTAGCCG--CAACAGTCAGGCGGTAGCAGCGGCA--GGAAAAATGACGCTCTACCGT 8183 Query 30994 TATGATGGCACGGTTAAAACCGTCTCAAACTGGCCTGCAGACAGCGGATTCACGCAGTAT 31053 || ||||||||||| ||||| | ||||||||| ||||| || |||||| || Sbjct 8182 TACGATGGCACGGTAAAAACACTGGAAAACTGGCCGAAAGACAAAAAATACACGCAATAC 8123 Query 31054 GAGTTAGGTTCAGTCCGTGACATTACTCGCTTACGTGGGCGTTATGCATGGTCAAAAGAC 31113 || | ||| | || || || || | || || || ||||||| |||| |||||| Sbjct 8122 GATATTGGTACCGTGCGGGATATGTGCCATTTGCGCGGACGTTATGTCTGGTGTAAAGAC 8063 Query 31114 GGTACTG--ATTCATGGTTTATCACTGACCTCGAAGATGAGTCGCATCCTGACCGGTACA 31171 || || | ||| ||| | |||| || | |||||||| || || |||||||| ||| Sbjct 8062 GGCACCGATATTTTTGG--TGTCACCGATTTGGAAGATGAATCTCACCCTGACCGCTACC 8005 Query 31172 GCGCACAATATCGTGCAGAATCGCAGCCAGACGGCATCATTGGCATCGGTTCATGGCGTG 31231 |||| | ||||| || ||||| || || |||||||| || || || | | ||||| | Sbjct 8004 GCGCGCTGTATCGCGCCGAATCACAACCCGACGGCATTATCGGTATTGATAGCTGGCGCG 7945 Query 31232 ACTTTATTGTTTGCTTCGGTTCGTCAACGATAGAGTATTTCTCCCTGACAGGCGCAACCA 31291 | |||||||| ||||| || |||| || || || ||||| |||||||| || || || Sbjct 7944 ATTTTATTGTCTGCTTTGGCGCGTCCACCATTGAATATTTTTCCCTGACCGGGGCGGCCG 7885 Query 31292 CCGCTGGC--GCTGCGTTGTATGTCGCACAACCATCGTTGATGGTACAGAAGGGGATTGC 31349 || ||| | || | |||| |||||| || | | ||||| |||| || ||||| Sbjct 7884 ACG--GGCAATCCGCCATCTATGCCGCACAGCCTGCACTCATGGTCGAGAAAGGCATTGC 7827 Query 31350 CGGAACATACTGTAAAACGCCATTCGCTGATTCATATGCATTCATCAGTCACCCGGCTAC 31409 ||| || |||| || || | ||| ||| | ||| ||||||| || | ||| || Sbjct 7826 CGGGACCCACTGCAAGACCCGGCTCGGCGATGCTCATGTGATCATCAGCCATCAGGCCAC 7767 Query 31410 TGGAGCACCTTCCGTCTACATCATCGGGTCAGG-GCAAGCTTCACCAATTGCGACGGCCA 31468 || || || || || ||| | || ||||| ||| || || | ||||| ||||||| Sbjct 7766 CGGCGCGCCGTCGGTATACCTGAT-TAATCAGGCGCAGGCGACATCGATTGCCACGGCCA 7708 Query 31469 GTATTGAGAAGATTATCCGCTCATACACAGCTGAAGAACTGGCGACTGGTGTAATGGAGA 31528 || ||||| ||| | ||| |||||| || |||||||||| | || ||||| | Sbjct 7707 CCATCGAGAAAATTCTACGCAGCTACACACACGATGAACTGGCGAGCGCCGTCATGGAAA 7648 Query 31529 CTTTGCGCTTCGATTCTCATGAGCTTCTGATTATTCATCTCCCTCGTCATGTTCTGGTTT 31588 | | || ||||| || || | || |||| ||| | || || || || || || Sbjct 7647 CCGTCCGTTTCGACAGCCACGAATTAGTGCTTATCCATTTGCCGCGACAGGTGTTGTGTT 7588 Query 31589 ACGACGCATCGTCAAGCCAGAACGGGCCGCAATGGTGCGTACTGAAAACCGGTTTATACG 31648 | ||||| || | | ||||||||||||||||||| || | |||||||| || || || Sbjct 7587 ATGACGCCGCGGCCAACCAGAACGGGCCGCAATGGAGCCTGCTGAAAACGGGCTTTTATC 7528 Query 31649 ACGATGTTTATCGCGCCATCGATTTCATGTACGAAGGCAACCAGATTACGTGTGGCGACA 31708 ||| | ||||||| ||||||||| |||| | | | | || | || |||||||| | Sbjct 7527 ACGCTCCCTATCGCGGCATCGATTTTATGTTTGCCGACCATCACCTCACCTGTGGCGATA 7468 Query 31709 AGTCAGAAGCGGTGACGGGGCAGTTGCAATTCGACATC-AGTAGTCAGTACGACAAGCAG 31767 | || || | || || | | || | |||| | || || || || | | Sbjct 7467 AACACGATGCCCTCCTCGGCCAACTTGATTTTG-CATCTTCTGCGCAATATGAAAAACCG 7409 Query 31768 CAAGAACACCTGTTGTTTACGCCCCTCTTCAAGGCAGATAACGCCAGATGCTTCGACCTC 31827 || || || | | | ||| || || |||||||||||||| ||| | || || | Sbjct 7408 CAGGAGCATGTTCTCTATACCCCGCTTTTCAAGGCAGATAATGCCCGCGTATTTGATTTT 7349 Query 31828 GAAGTTGAATCATCCACTGGTGTTGCTCAATACGCTGACCGCCTGTTCCTGTCTGCAACC 31887 ||| | || |||| || || || || || ||| |||||||| ||||| || || ||| Sbjct 7348 GAACTGGAGGCATCAACCGGCGTGGCGCACATCGCCGACCGCCTCTTCCTCTCCGCCACC 7289 Query 31888 ACAGACGGAATCAATTACGGTCGCGAACAGATGATTGAGCAGAATGAGCCGTTTGTGTAC 31947 | ||||| || ||| || ||||||||||||||| | || |||| |||||||| ||| Sbjct 7288 GCCGACGGCATGCATTTTGGCCGCGAACAGATGATTAACCAAAATGCGCCGTTTGCGTAT 7229 Query 31948 GACAAGAGAGTTTTATGGAAGCGTGTAGGTCGTATTCGTC-GATTAA---TCGGATTCAA 32003 ||| || || || | ||| ||| ||| | | | || || || |||| || || Sbjct 7228 GACCAGCGAATTCTCTGGCGGCG----GGTTGGCTACATCAGAAAAAATGTCGGCTTTAA 7173 Query 32004 ACTGCGTGTAATCACCAAATCACCAGTAACACTATCCGGGTGTCAAATTCGTCTGGAGTA 32063 | | || || |||||| ||| || || || || ||||| ||||| || | |||| || Sbjct 7172 AGTACGGGTGATCACCTCATCGCCCGTGACGCTCTCCGGTTGTCAGATAAGGATGGAATA 7113 Query 32064 A 32064 | Sbjct 7112 A 7112 Score = 105 bits (116), Expect = 2e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 33447 TATCAACGCTGGAAGGTCAGAACAGCGCTCTCAATCAGTATTACAACTCAGACCAGTATA 33506 |||| ||||| || || || |||| || ||| | | |||||||||||||||||||| Sbjct 5926 TATCGACGCTCGAGGGACAAAACAAGGCGCTCGGTGATTATTACAACTCAGACCAGTACC 5867 Query 33507 AACAGTTGGCTGATCAGGCTCGCTATCAAAGCCTGAATGCAGCGGAAGCCACCGGAGGTC 33566 || |||| || ||||| || ||||| ||| | || || || ||||| || | Sbjct 5866 GGCAACTGGCCGACCAGGCGCGTTATCAGTCGCTGGCGTCCGCAGAGGCGACCGGCGGAC 5807 Query 33567 TTGGCTCTACAGCAACATCAAACCAAATTGCATCCATTGCACCAACGCTCGGGCAGAACT 33626 | || || || || || || ||| | || |||| || || ||||||||||||||| Sbjct 5806 TGGGGTCAACGGCTACCGGTAATCAACTGGCGGCCATCGCGCCTGCGCTCGGGCAGAACT 5747 Query 33627 GGTTGTCAGGGCAGATGCAAAACTATGGCAA 33657 || | || || || ||||| ||||| ||||| Sbjct 5746 GGCTCTCCGGTCAAATGCAGAACTACGGCAA 5716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128285484833580