Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_018275.1 Length=39783 Score E Sequences producing significant alignments: (Bits) Value seq556 408 1e-109 >seq556 Length=23517 Score = 408 bits (452), Expect = 1e-109 Identities = 965/1438 (67%), Gaps = 36/1438 (3%) Strand=Plus/Minus Query 7404 AATGCCGATTCAACAACTCCCCATGATGAAGGGAATGGGTAAAGACTTCAAGAATGCCGA 7463 |||| |||| ||| | ||| |||| || || | ||||||| | | | ||||| Sbjct 8531 AATGGCGATAATGCAATTACCCCTGATAAAAGGTCTCGGTAAAGCGCGCGATGACGCCGA 8472 Query 7464 CTATATTGATTACCTACCAATCAATATGTTGGCTACACCGAAAGAAGTCCTCAACTCATC 7523 ||||| || | | || |||||||| ||||||| || || || | || | Sbjct 8471 TTATATCGACGCCTTGCCGGTCAATATGCTGGCTACGCCCAAGCCGGTATTGAATGCCAG 8412 Query 7524 GGGTTATTTACGCTCATTCCCCGGCATAGC--GAAGCGCAACGATGTAAATGGTGTATCG 7581 |||||| ||||||| || ||||| || || | | ||| || || || || || Sbjct 8411 CGGTTATCTACGCTCGTTTCCCGGTATTGCCCGCAAAGCA--GAGGTCGCCGGGGTGTCC 8354 Query 7582 CGTGGTGTTGAATACAATACCGCGCAGAACGCTGTATATCGCGTTTTAGGCAGCAAGCTC 7641 || || ||| | ||||||||| | || | || ||||||| | || | | | Sbjct 8353 CGAGGCGTTCAGTACAATACCCATGAAAAGACGGTTTATCGCGGGCTGGGAAATCAATTA 8294 Query 7642 TACAAAGGGGA--AACCGTAGTAGGTGATGTTGCCGGAAGCGGTCGCGTATCTATGGCAC 7699 |||||||| | ||||| ||| ||| |||| |||| |||||| | ||||| Sbjct 8293 TACAAAGGCCATAAACCGA--TAGCGGATATTGCTGGAAAGGGTCGCATCAGCATGGCGT 8236 Query 7700 ATGGTCGCACATCACAGGCGGTAG--GCGTTAATGGTCAACTGGTCGAGTATCGCTATGA 7757 | | |||| |||||||||| ||| | || || || || || || || Sbjct 8235 TTAGCCGCAACAGTCAGGCGGTAGCAGCGGCA--GGAAAAATGACGCTCTACCGTTACGA 8178 Query 7758 TGGCACCGTTAAAACCGTCTCAAACTGGCCTGCAGACAGCGATTACACGCAGTATGAGTT 7817 |||||| || ||||| | ||||||||| ||||| | |||||||| || || | Sbjct 8177 TGGCACGGTAAAAACACTGGAAAACTGGCCGAAAGACAAAAAATACACGCAATACGATAT 8118 Query 7818 AGGTTCAGTACGTGACATTACTCGCTTACGTGGGCGTTATGCATGGTCAAAAGACGGCAC 7877 ||| | || || || || | || || || ||||||| |||| ||||||||||| Sbjct 8117 TGGTACCGTGCGGGATATGTGCCATTTGCGCGGACGTTATGTCTGGTGTAAAGACGGCAC 8058 Query 7878 TGATTCATGGTT--TATCACTGACCTTGAAGACGAATCGCACCCTGACCGATACAGCGCA 7935 ||| || || | |||| || | ||||| ||||| ||||||||||| ||| |||| Sbjct 8057 CGAT--ATTTTTGGTGTCACCGATTTGGAAGATGAATCTCACCCTGACCGCTACCGCGCG 8000 Query 7936 CAATATCGTGCCGAGTCGCAGCCTGACGGCATCATCGGCATCGGCACATGGCGAGACTTC 7995 | ||||| ||||| || || || |||||||| ||||| || | | ||||| || || Sbjct 7999 CTGTATCGCGCCGAATCACAACCCGACGGCATTATCGGTATTGATAGCTGGCGCGATTTT 7940 Query 7996 ATTGTCTGCTTTGGTTCATCGACGATTGAATATTTTTCCCTGACTGGTGCAACCACCGCT 8055 |||||||||||||| | || || |||||||||||||||||||| || || || || Sbjct 7939 ATTGTCTGCTTTGGCGCGTCCACCATTGAATATTTTTCCCTGACCGGGGCGGCCGACG-- 7882 Query 8056 GGC--GCTGCGTTGTATGTCGCACAGCCATCGTTGATGGTACAGAAGGGCATTGCCGGAA 8113 ||| | || | |||| ||||||||| | | ||||| |||| ||||||||||| | Sbjct 7881 GGCAATCCGCCATCTATGCCGCACAGCCTGCACTCATGGTCGAGAAAGGCATTGCCGGGA 7822 Query 8114 CATACTGTAAAACGCCATTCGCTGATTCATATGCATTCATCAGTCACCCGGCTACTGGCG 8173 | |||| || || | ||| ||| | ||| ||||||| || | ||| || |||| Sbjct 7821 CCCACTGCAAGACCCGGCTCGGCGATGCTCATGTGATCATCAGCCATCAGGCCACCGGCG 7762 Query 8174 CACCTTCCGTCTACATCATCGGGTCAGG-GCAGGCTTCACCAATTGCGACGGCCAGTATT 8232 | || || || ||| | || ||||| |||||| || | ||||| ||||||| || Sbjct 7761 CGCCGTCGGTATACCTGAT-TAATCAGGCGCAGGCGACATCGATTGCCACGGCCACCATC 7703 Query 8233 GAGAAAATTATCCGCTCATACACGGCTGATGAACTGGCAACCGGGGTGATGGAAGCGTTG 8292 ||||||||| | ||| ||||| ||||||||||| | || || |||||| | | Sbjct 7702 GAGAAAATTCTACGCAGCTACACACACGATGAACTGGCGAGCGCCGTCATGGAAACCGTC 7643 Query 8293 AGGTTCGATTCGCATGAACTGCTGATTATCCATCTCCCGCGTCATGTGCTGGTTTACGAT 8352 | ||||| || ||| | || |||||||| | ||||| || ||| || ||| || Sbjct 7642 CGTTTCGACAGCCACGAATTAGTGCTTATCCATTTGCCGCGACAGGTGTTGTGTTATGAC 7583 Query 8353 GCCTCATCAAGCCAGAACGGGCCGCAATGGTGCGTACTGAAAACAGGTTTATACGACGAT 8412 ||| | | | ||||||||||||||||||| || | |||||||| || || || ||| | Sbjct 7582 GCCGCGGCCAACCAGAACGGGCCGCAATGGAGCCTGCTGAAAACGGGCTTTTATCACGCT 7523 Query 8413 GTTTATCGTGCCATCGATTTCATGTACGAAGGAAACCAGATTGCGTGTGGCGACAAGTCA 8472 ||||| | ||||||||| |||| | | | || | | |||||||| || Sbjct 7522 CCCTATCGCGGCATCGATTTTATGTTTGCCGACCATCACCTCACCTGTGGCGATAAACAC 7463 Query 8473 GAAGCGGTGACAGGGCAGTTGCAATTCGACAT-TAGTAGCCAGTACGACAAGCAGCAAGA 8531 || || | || || | | || | ||| | | || || || || | ||| || Sbjct 7462 GATGCCCTCCTCGGCCAACTTGATTTTG-CATCTTCTGCGCAATATGAAAAACCGCAGGA 7404 Query 8532 ACACCTGTTGTTTACACCC--CTATTCAAAGCGGACAATGCCAGATGCTTCGACCTCGAA 8589 || |||| | || |||| || ||||| || || |||||| | || || | ||| Sbjct 7403 GCA--TGTTCTCTATACCCCGCTTTTCAAGGCAGATAATGCCCGCGTATTTGATTTTGAA 7346 Query 8590 GTTGAATCATCCACTGGTGTTGCTCAATACGCTGACCGCCTGTTCCTGTCTGCAACCACA 8649 | || |||| || || || || || ||| |||||||| ||||| || || ||| | Sbjct 7345 CTGGAGGCATCAACCGGCGTGGCGCACATCGCCGACCGCCTCTTCCTCTCCGCCACCGCC 7286 Query 8650 GACGGAATCAATTACGGTCGCGAACAGATGATTGAGCAGAATGAGCCGTTTGTGTACGAC 8709 ||||| || ||| || ||||||||||||||| | || |||| |||||||| ||| ||| Sbjct 7285 GACGGCATGCATTTTGGCCGCGAACAGATGATTAACCAAAATGCGCCGTTTGCGTATGAC 7226 Query 8710 AAGAGAGTTTTATGGAAGCGTGTAGGTCGTATTCGTC-GATTAA---TCGGATTCAAACT 8765 || || || | ||| ||| ||| | | | || || || |||| || ||| | Sbjct 7225 CAGCGAATTCTCTGGCGGCG----GGTTGGCTACATCAGAAAAAATGTCGGCTTTAAAGT 7170 Query 8766 GCGGGTAATCACCAAATCACCTGTAACACTATCCGGGTGTCAAATTCGTCTGGAGTAA 8823 ||||| |||||| ||| || || || || ||||| ||||| || | |||| ||| Sbjct 7169 ACGGGTGATCACCTCATCGCCCGTGACGCTCTCCGGTTGTCAGATAAGGATGGAATAA 7112 Score = 104 bits (114), Expect = 6e-18 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 10197 AAGGTTTATCCTCTCTCGAAGGTCAGGGGCAGGCGCTTAACGATTATTACAACTCTCAGC 10256 |||| ||||| | ||||| || || ||||||| |||||||||||||| | | Sbjct 5932 AAGGATTATCGACGCTCGAGGGACAAAACAAGGCGCTCGGTGATTATTACAACTCAGACC 5873 Query 10257 AGTACAAAGATCTTGCTGGTCAGGCTCGCTATCAGAGTCTGGCGGCAGCGGAAGCAACAG 10316 ||||| | || || | ||||| || |||||| |||||| | || || || || | Sbjct 5872 AGTACCGGCAACTGGCCGACCAGGCGCGTTATCAGTCGCTGGCGTCCGCAGAGGCGACCG 5813 Query 10317 GTGGATTGGGTTCCACTGCAACCGGTAATCAGTTAGCAACAATCGCACCAACGCTTGGTC 10376 | ||| |||| || || || ||||||||||| | || | ||||| || |||| || | Sbjct 5812 GCGGACTGGGGTCAACGGCTACCGGTAATCAACTGGCGGCCATCGCGCCTGCGCTCGGGC 5753 Query 10377 AGCAATGGCTATCTGGTCAGATGAACAACTAC 10408 || | ||||| || ||||| ||| | |||||| Sbjct 5752 AGAACTGGCTCTCCGGTCAAATGCAGAACTAC 5721 Score = 93.3 bits (102), Expect = 1e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 12023 GCAATTGTCCGATGACGAATTAATTGGCAAATATCTCGGAGGGCAG-TAATGGCCTATAG 12081 |||| |||||||||| ||| | | ||||||||||| ||| || | |||||||||| Sbjct 4273 GCAACTGTCCGATGATGAACTGGTCAATAAATATCTCGG-GGGAAGATGATGGCCTATAA 4215 Query 12082 TCGTGAACAATTGATGACGGCGTTAAGGAATGCTGATGCTGCTGGTGATACTGAGGGAGC 12141 || |||||| ||||||| |||||| | ||||||||||| ||||| || || || || Sbjct 4214 CCGAGAACAACTGATGACCGCGTTACGCAATGCTGATGCGGCTGGAGACACCGAATCGGC 4155 Query 12142 ACGTCGCATCGCTCAGAT 12159 | || ||||| ||||| Sbjct 4154 AACGCGTATCGCGCAGAT 4137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127181506478190