Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq439 540 3e-149 >seq439 Length=76666 Score = 540 bits (598), Expect = 3e-149 Identities = 671/911 (74%), Gaps = 11/911 (1%) Strand=Plus/Minus Query 394 GATGGCAGCATGACGCCGCAGCC-AACAATCATCCAGCTACTGCCTGTTGAGCCAAAGCA 452 |||||||||||| | | |||| ||| || || ||||| | || || || ||||||| Sbjct 9438 GATGGCAGCATGGC-CATTAGCCCAACGATGATTCAGCTTGTACCGGTAGAAGCAAAGCA 9380 Query 453 TGAGTAACGCCGTTCAATTGCCGATCCCCGCGAAGCTTGCGCCACTGTTCACTGCGGTGA 512 ||| || | | ||| |||| || || || || |||| ||| | |||||| | | Sbjct 9379 TGAATAGTG---TGCAACTGCCTATTCCAGCAAAACTTGTCCCATTATTCACTATGCCCA 9323 Query 513 ATAAGCGTTATCGATGCTCGCACGGTGGACGTGGCAGCGCCAAGACGCGCACATTTGCCC 572 |||| |||||||| || | ||||||| |||||||| || || |||||||| ||||| | Sbjct 9322 ATAAACGTTATCGCTGTGCATACGGTGGGCGTGGCAGTGCAAAAACGCGCACCTTTGCGC 9263 Query 573 TGATGACTGCCGTAAAGGCGTATCAGTCGATGATGAACGGTGAAAGCGGCGTGGTGCTAT 632 | |||| || || ||||| |||||| | | ||| |||| ||||| | || | Sbjct 9262 TAATGATGGCGGTTAAGGCTTATCAGGCAGCAAGAAACAGTGAGTCAGGCGTCATACTTT 9203 Query 633 GCGCGCGTGAGTTCATGAACTCGCTGGAAGAGTCGAGCATGCAGGAAGTGAAGCAGGCGA 692 ||| ||||||||| ||||||||||||||||||||||| |||||||||||||| | ||| | Sbjct 9202 GCGTGCGTGAGTTTATGAACTCGCTGGAAGAGTCGAGTATGCAGGAAGTGAAACTGGCAA 9143 Query 693 TCCTGTCTGTTCCCTGGCTGGCCGCCAACTTTGATATCGGCGAGAAGTATATCCGCACCA 752 | | ||| || || |||||||| || ||||||||||||| || || || || |||||| Sbjct 9142 TACAGTCAGTGCCATGGCTGGCGGCTCACTTTGATATCGGTGAAAAATACATTCGCACCC 9083 Query 753 TCGACAAGAGCGTTAACTACGTGTTCTGCGGTCTGAGGCATAACCTCGACAGCATCAAGT 812 |||||| | | || | ||| |||||| | || || ||||||| || ||||| ||||| | Sbjct 9082 TCGACAGGCGAGTGAGCTATGTGTTCAGTGGACTTCGGCATAATCTTGACAGTATCAAAT 9023 Query 813 CGAAAGCGCGCATTCTGCTGTGCTGGGTCGACGAGGCTGAATCAGTCAGCGAAATAGCCT 872 ||||||| || ||||||||||||||||| || ||||||||| | || ||||||||||||| Sbjct 9022 CGAAAGCACGTATTCTGCTGTGCTGGGTGGATGAGGCTGAAACCGTTAGCGAAATAGCCT 8963 Query 873 GGCAGAAGCT-GAGCCCAACAGTTCGTGAAGAAGGCTCAGAGATTTGGGTGACGTGGAAC 931 ||||||| || || |||| | || || || ||||| || | ||||| || |||||| Sbjct 8962 GGCAGAAACTCGATCCCACC-GTACGAGAGCCTGGCTCTGAAGTATGGGTAACATGGAAC 8904 Query 932 CCGGAGCGTGACGGTAGCGCCACTGATAAGCGTTTCCGCAAAGAAGCAGGCGACGACTGC 991 || ||| || |||||||| || |||||||| || ||||| || | |||| | Sbjct 8903 CCTGAGACAGAGGGTAGCGCGACCGATAAGCGATTTCGCAAGGATAGTGATGACGCCATT 8844 Query 992 ATCACCGTTGAAATGAACTATACGGATAACCCGTGGTTCCCTGACGTGCTGGAAGGCGAG 1051 ||| | |||||||||||||| | |||||| || ||||| | ||||| || || || Sbjct 8843 ATCGCGGTTGAAATGAACTACATGGATAATCCATGGTTTCACAGTGTGCTTGA--GCAAG 8786 Query 1052 CGA--CAGAACGATCAGCGCCGCCTCGACCCGGCAACATACGCATGGGTGTGGGAGGGTG 1109 || ||| || | || || ||| ||||||| || || ||| | ||||| || | Sbjct 8785 TGAGGCAGCGGGACCTCCGTATGCTTGACTCGGCAACCTATGCCTGGATTTGGGAAGGCG 8726 Query 1110 CTTACCTCGAAAACTCCGATAAGCAGGTGCTGGCCGGGAAATACCGGATCGCTGAGTTCT 1169 | || || |||||| | |||||||||| || |||||||| | | | |||| Sbjct 8725 CGTATCTGGAAAACGCTAATAAGCAGGTCATGAGTGGGAAATATGTGTTTGAAACGTTCC 8666 Query 1170 CAGACGAACTATGGAAAGAGGCCGATCGCCTGTTCTTCGGAGCTGACTTCGGTTTCGCTA 1229 | || || || ||||| |||||||||| |||||||| || || || || || || || Sbjct 8665 CGGATGATCTGTGGAAGCAGGCCGATCGGCTGTTCTTTGGTGCCGATTTTGGCTTTGCGC 8606 Query 1230 AAGACCCCAACACGCTAGTTCGCTCGTTCATCCTGCACAACCGGCTGTACATCGAATACG 1289 |||| || || |||||| | ||| |||||| ||| | ||||| || ||||| ||||||| Sbjct 8605 AAGATCCGAATACGCTAATACGCATGTTCATACTGGATAACCGACTCTACATTGAATACG 8546 Query 1290 AGGCATACGGT 1300 |||| |||||| Sbjct 8545 AGGCTTACGGT 8535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157046520944436