Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq53 179 3e-40 seq1 149 5e-31 seq308 147 2e-30 seq146 98.7 8e-16 seq79 96.9 3e-15 >seq53 Length=1361919 Score = 179 bits (198), Expect = 3e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | |||||| |||||||| || || ||||||||||| ||||| ||||||| Sbjct 1241789 CCTCCGCGAAGACGTAAGACTAAATGGAGTGTTGATTCTTTTTGGATATTTTAATCGGAC 1241730 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | || |||||||| || || ||||| |||||||||||||||||||| | | Sbjct 1241729 AGAGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGTTGATCGGGAGAA 1241670 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| |||||||| |||||| ||| || |||| | ||| || |||| || || Sbjct 1241669 ATACCTTCCTTATCTTGGATTTTTGCTTTAACCGTTTCGATAGTATCCGACGGCTCTACC 1241610 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||| | |||||||| || |||||||| ||||| || ||||| Sbjct 1241609 TCCAAAGTAATAGTTTTGCCAGTCAAAGTTTTAACAAAGATTTGCAT 1241563 Score = 176 bits (194), Expect = 4e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | | ||| || || ||||| | |||||||| ||||||| ||||||||| | Sbjct 1240217 TTCCACCACGGAGACGCAACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCCG 1240158 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | | | || || ||||| || || ||||| ||||||||||| ||||| || | Sbjct 1240157 AAAGAGTGCGGCCGTCTTCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTGGAG 1240098 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||||||||||||||||||| ||| || |||| | ||| || || | ||| | Sbjct 1240097 GAATACCTTCTTTATCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTA 1240038 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||| | ||| | ||||| || || |||||||| ||||| ||||||||| Sbjct 1240037 CTTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTAACAAAGATCTGCATG 1239988 Score = 174 bits (192), Expect = 1e-38 Identities = 168/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||||| ||| || || | || ||||||||||||||||||||||| | | || | | Sbjct 1232559 ACGTAGAACCAAGTGCAATGTTGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCC 1232500 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||| ||| || || ||||| ||||||||||| |||||||| ||||| |||||||| Sbjct 1232499 ATCTTCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGAATACCTTCTTT 1232440 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| || ||| ||||||| |||| | || ||||| | ||||||||| | ||||| Sbjct 1232439 GTCTTGGATCTTTGCTTTTACATTTTCAATTGTATCAGATGGTTCCACTTCTAAAGTGAT 1232380 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| || || || ||||| || || ||||| Sbjct 1232379 TGTTTTGCCAGTCAATGTCTTTACGAAGATTTGCAT 1232344 Score = 168 bits (186), Expect = 5e-37 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||| || |||||||| | ||| |||||||| ||||| |||||||| | || ||| | Sbjct 1239978 AAACGCAACACTAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCCGAGAGAGTGCGA 1239919 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 |||| |||||||| ||||| || || ||||||||||| || || || ||||| ||||| Sbjct 1239918 CCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCC 1239859 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 |||||||| || || ||| || |||| |||||||| || | || || || | ||| Sbjct 1239858 TTATCTTGGATCTTAGCTTTAACGTTTTCAACAGTGTCGGAAGGCTCTACCTCCAAAGTA 1239799 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | |||||||| || |||||||| ||||| || ||||| Sbjct 1239798 ATGGTTTTGCCAGTCAAAGTTTTAACAAAAATTTGCAT 1239761 Score = 161 bits (178), Expect = 8e-35 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | || |||||||| |||||||||||||| | | ||| | | || || Sbjct 1241543 ACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCCGAAAGAGTGCGACCGTCTTCT 1241484 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| || || ||||| ||||||||||| ||||| || ||||| ||||||||||||||| Sbjct 1241483 AATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTATCTTGA 1241424 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 |||||| ||| || |||| | ||| || || | ||| || || | ||| | | |||| Sbjct 1241423 ATTTTTGCTTTAACGTTTTCGATAGTATCTGATGGTTCTACCTCCAAAGTAATGGATTTG 1241364 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||||||||||||| || ||||| Sbjct 1241363 CCAGTCAAAGTTTTTACAAAGATTTGCAT 1241335 Score = 156 bits (172), Expect = 3e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | | ||| || || ||||| | || |||||||| ||||||||||| || | Sbjct 1240445 TTCCACCGCGGAGACGCAACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCG 1240386 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 || ||| | | || |||| || || || ||||| ||||||||||| || || || | Sbjct 1240385 AGAGAGTACGACCGTCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 1240326 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||||||||||||||||||| || || |||| | ||| || || | ||| | Sbjct 1240325 GAATACCTTCTTTATCTTGAATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTTCTA 1240266 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | ||| | |||||||| || |||||||| |||||||| ||||| Sbjct 1240265 CCTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAATATTTGCAT 1240217 Score = 149 bits (164), Expect = 5e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 ||||| || ||||| || ||||| || ||||| || || ||||||| || ||| | | || Sbjct 1234450 CGTAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCGGAGAGAGTACGGCCA 1234391 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || |||||||| ||||| || || ||||||||||| || || || ||||| ||||| ||| Sbjct 1234390 TCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTA 1234331 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 || || || || ||| || |||| | || || || | || ||||| | ||||| Sbjct 1234330 TCCTGGATCTTAGCTTTGACGTTTTCAATGGTATCGGAAGGCTCGACTTCCAAAGTGATG 1234271 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| ||||| |||||||| || || || ||||| Sbjct 1234270 GTTTTACCGGTCAAAGTTTTGACGAAGATTTGCAT 1234236 Score = 134 bits (148), Expect = 1e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 |||||||| || ||||| | |||||||| ||||||||||||||||| | | || | Sbjct 1232789 AAACGTAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGACAATGTGCGC 1232730 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 | || || || || ||||| || || || |||||||||||||| || || || ||||| Sbjct 1232729 CCGTCTTCTAACTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGTGGGATTCCTTCC 1232670 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 ||||||||||| || || ||| | || | ||| || || | || || || | ||| Sbjct 1232669 TTATCTTGAATCTTAGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAGGTG 1232610 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 | |||||||| || || || || ||||| || |||||| Sbjct 1232609 ATAGTTTTGCCAGTCAATGTCTTGACAAAAATTTGCATG 1232571 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||| || || ||||| | |||||||| ||||||||||||||||| | | || | Sbjct 1239750 AAACGCAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGACAATGTGCGC 1239691 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 | || || | || ||||| || ||||| ||||| |||||||| || || || ||||| Sbjct 1239690 CCGTCTTCTAGCTGTTTACCAGCGAATATTAAACGTTGTTGATCTGGTGGGATTCCTTCC 1239631 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 ||||||||||| || ||| ||| | || | ||| || || | || || || | ||| Sbjct 1239630 TTATCTTGAATCTTAGCTTTAACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAGGTG 1239571 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || || || || || || || |||||||| Sbjct 1239570 ACAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 1239533 Score = 104 bits (114), Expect = 2e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | |||||||| || ||||| || ||||| || |||||||| |||||||||| | Sbjct 1234234 CCGCCACGTAAACGTAGGACCAAATGGAGAGTAGACTCCTTTTGTATGTTGTAATCGGAG 1234175 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| |||||||| ||||| || || ||||||||||| || || || ||| Sbjct 1234174 AGAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 1234115 >seq1 Length=10097680 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| ||||| | || ||||| | || |||||||| |||||||||||||| | Sbjct 7547615 CCACCTCGCAAACGAAGTACCAAATGCAATGTCGATTCTTTCTGTATATTGTAATCAGAC 7547556 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| |||||||| || || || || |||||||| || ||||| || ||| Sbjct 7547555 AAAGTCCGCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGA 7547496 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| ||||| || |||||||| || ||| |||| | |||||| || | || ||| Sbjct 7547495 ATGCCCTCTTTGTCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACT 7547436 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||| | |||||||| || | |||||| || || || ||||| Sbjct 7547435 TCCAAAGTAATTGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 7547389 >seq308 Length=190705 Score = 147 bits (162), Expect = 2e-30 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| ||||| || || | ||| | || ||||||||||| ||||| ||||| || Sbjct 86622 CCACCTCGCAAACGCAACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATC--CG 86679 Query 101303 ATA--GTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 ||| || | |||| |||||||| || || || || ||||| || ||||| ||||| | Sbjct 86680 ATAATGTGCGACCATCTTCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTG 86739 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| || ||||| || ||||| || ||| ||| |||| | ||| ||||| | || | Sbjct 86740 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGA 86799 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | |||||||| | || ||||| || | ||||||||||| |||||||| Sbjct 86800 CCTCAAGAGTAATGGTCTTGCCCGTAAGGGTTTTTACAAAAATCTGCAT 86848 >seq146 Length=585010 Score = 98.7 bits (108), Expect = 8e-16 Identities = 228/341 (67%), Gaps = 2/341 (1%) Strand=Plus/Plus Query 13763 TAACCGTTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATT 13822 |||||||| ||||| ||||||||||||||| || || || ||| ||| | | | Sbjct 531898 TAACCGTTAGGATCCGTTCCATCCAAACTGTACTTATCATTTAAAAATAGTGAAATTTCT 531957 Query 13823 AAAGCCACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATA 13882 ||||| || ||| | |||||||||| | || ||||| |||||||| || | || | Sbjct 531958 AAAGCGTCTTCAGGAGTTTTAGACCATTCCAGAATCTTTTTCGCCCAATACATGCGCAAA 532017 Query 13883 TATCCGTGCATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACAATATGTCA 13942 | ||||||||||| || | || | | ||| |||||| | |||||||| || Sbjct 532018 AAACCGTGCATTTTACCCTCTCTTATCAATTGTAACTGAGCTGAATTCCACAAATCATCG 532077 Query 13943 TGAGTTTCGGAATTTTCTAATTCTCTTCTATTGTAACAATATTCCCGGCCTTCGTTTGC- 14001 | ||| ||| || || ||||| | | | || || || | || | || || Sbjct 532078 TAAGTAACGGCCTTCTCGAATTCGTCTAAAGTATAGCACGGATCTC-GCTTATCTTCGCG 532136 Query 14002 ATGCAGACTCAACGTTTCTTTAGCCCAATCAGGCGCGCCTTCAAACCGATCATAATTGAT 14061 || | ||| |||| | |||||| | ||||||||| |||||||| | Sbjct 532137 GTGTTCATTCAGAGTTTTGCGCGACCAATCTTGTAAGCCTTCAAAATTGTCATAATTTTT 532196 Query 14062 GTTGTAATAGCAAAAGTTGTCTGCCAATTCTCGTCGAACAA 14102 ||| ||| ||||||| || || ||||||||||| | ||||| Sbjct 532197 GTTATAAAAGCAAAAATTTTCCGCCAATTCTCGCCTAACAA 532237 >seq79 Length=930496 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 101251 TAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGT-TC 101309 |||||| | ||| | ||| || || ||||| ||||||||||| ||||| | |||| | Sbjct 451353 TAAACGCAGAACCATATGGAGAGTGGATTCCTTTTGTATATTATAATC--CATTAGTGTG 451410 Query 101310 TG-GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCT 101368 || |||| || | |||||||| ||| | |||||||| ||||||| || || ||||| Sbjct 451411 TGACCATCTTCTAGCTGCTTACCGGCATAGATCAAACGACGTTGATCTGGTGGGATGCCA 451470 Query 101369 TCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGA 101428 | | |||| |||||||| ||| || ||| | || || | || || || || | Sbjct 451471 TTTGTATCCTGAATTTTGGCTTTAACCGCTTCAATCGTATCGGTCGGTTTTACGTCTAAT 451530 Query 101429 GTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | || || || ||||| ||||| |||||||| Sbjct 451531 GTGATAATATTACCCTCCAACGTTTTCACAAAGATCTGCAT 451571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396270426259407