Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq308 127 2e-24 seq53 118 8e-22 seq327 91.5 1e-13 seq1 89.7 4e-13 >seq308 Length=190705 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||||||| | ||||| |||| |||||||||||||| ||||| |||| | ||| | Sbjct 86634 CGCAACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCGATAATGTGCGACCA 86693 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||| || || || || || |||| ||| ||||| || | |||| ||||| ||| Sbjct 86694 TCTTCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTGGAATTCCCTCTTTG 86753 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || |||||| ||| ||| | | || || || | ||| ||||| | ||||| Sbjct 86754 TCCTGAATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGACCTCAAGAGTAATG 86813 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| | |||||||||||||||||||| Sbjct 86814 GTCTTGCCCGTAAGGGTTTTTACAAAAATCTGCAT 86848 >seq53 Length=1361919 Score = 118 bits (130), Expect = 8e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||||||| ||||| | || ||||| || || |||||||| || ||| | ||| | Sbjct 1239975 CGCAACACTAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCCGAGAGAGTGCGACCA 1239916 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||| || ||||| || || |||| ||||| || || | ||||| || ||||| Sbjct 1239915 TCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTA 1239856 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||||| ||| || | |||| || || | ||| ||||||| ||||| Sbjct 1239855 TCTTGGATCTTAGCTTTAACGTTTTCAACAGTGTCGGAAGGCTCTACCTCCAAAGTAATG 1239796 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||||||||| |||||||| ||||| Sbjct 1239795 GTTTTGCCAGTCAAAGTTTTAACAAAAATTTGCAT 1239761 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || || ||||| || || |||||||| ||||| ||||| || ||| | || Sbjct 1241780 AGACGTAAGACTAAATGGAGTGTTGATTCTTTTTGGATATTTTAATCGGACAGAGTGCGC 1241721 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||| || || || ||||| |||| ||||||||||| | | || || ||| Sbjct 1241720 CCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGTTGATCGGGAGAAATACCTTCC 1241661 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || || ||| ||| || | | | || || |||| ||| ||||||| ||| Sbjct 1241660 TTATCTTGGATTTTTGCTTTAACCGTTTCGATAGTATCCGACGGCTCTACCTCCAAAGTA 1241601 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || ||||||||||| ||||| || ||||| Sbjct 1241600 ATAGTTTTGCCAGTCAAAGTTTTAACAAAGATTTGCAT 1241563 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||||||| | || ||||| || ||||||||||| || ||| | ||| Sbjct 1241552 AGACGCAGCACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCCGAAAGAGTGCGA 1241493 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || || || || || ||||| |||| ||||| ||||| | |||| || || Sbjct 1241492 CCGTCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCT 1241433 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| ||| ||| || | | || ||||| | || ||||||| ||| Sbjct 1241432 TTATCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCTGATGGTTCTACCTCCAAAGTA 1241373 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||| || ||||||||||||||||| || ||||| Sbjct 1241372 ATGGATTTGCCAGTCAAAGTTTTTACAAAGATTTGCAT 1241335 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||||||||| | || || ||||| | ||||||||| || ||| | || Sbjct 1240206 AGACGCAACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCCGAAAGAGTGCGG 1240147 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || || || || || ||||| |||| ||||| ||||| | |||| || || Sbjct 1240146 CCGTCTTCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCT 1240087 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| ||| ||| || | | || || || | || || |||| ||| Sbjct 1240086 TTATCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTA 1240027 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| ||||||||||| ||||| |||||||| Sbjct 1240026 ATGGTTTTTCCAGTCAAAGTTTTAACAAAGATCTGCAT 1239989 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||||||||| | || ||||| || |||||||| || || ||| | ||| Sbjct 1240434 AGACGCAACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCGAGAGAGTACGA 1240375 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| ||| || || ||||| |||| ||||| || || | |||| || || Sbjct 1240374 CCGTCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCT 1240315 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| ||| || || | | || || || | || ||||||| ||| Sbjct 1240314 TTATCTTGAATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTTCTACCTCCAAAGTA 1240255 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || ||||||||||| ||||| || ||||| Sbjct 1240254 ATGGTTTTGCCAGTCAAAGTTTTAACAAATATTTGCAT 1240217 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 || || |||||||| | ||| || ||||| |||||||||||||| | | || || Sbjct 1232786 CGTAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGACAATGTGCGCCCG 1232727 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || ||||| ||||| || || || | ||||||||||| | || | || ||||| Sbjct 1232726 TCTTCTAACTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGTGGGATTCCTTCCTTA 1232667 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || |||||| || ||| | | || || || | ||| ||||||| || || Sbjct 1232666 TCTTGAATCTTAGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATA 1232607 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||| || || |||||||| ||||| Sbjct 1232606 GTTTTGCCAGTCAATGTCTTGACAAAAATTTGCAT 1232572 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 ||||| |||||||| | ||| || ||||| |||||||||||||| | | || || Sbjct 1239747 CGCAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGACAATGTGCGCCCG 1239688 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | ||| ||||| || ||||| | || |||||||| | || | || ||||| Sbjct 1239687 TCTTCTAGCTGTTTACCAGCGAATATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTA 1239628 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || |||||| ||| ||| | | || || || | ||| ||||||| || | Sbjct 1239627 TCTTGAATCTTAGCTTTAACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGACA 1239568 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||| || || || || |||||||| Sbjct 1239567 GTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 1239533 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || |||||||| || || ||| |||||||| || ||||| || ||| | || Sbjct 1234453 AGGCGTAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCGGAGAGAGTACGG 1234394 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| || ||||| || || |||| ||||| || || | ||||| || ||| Sbjct 1234393 CCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCC 1234334 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| ||| || | | | || || | ||| || |||| || Sbjct 1234333 TTATCCTGGATCTTAGCTTTGACGTTTTCAATGGTATCGGAAGGCTCGACTTCCAAAGTG 1234274 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || ||||||||||| || || || ||||| Sbjct 1234273 ATGGTTTTACCGGTCAAAGTTTTGACGAAGATTTGCAT 1234236 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||| |||||||||||||| | | || | || |||| || || || ||||| Sbjct 1232534 TCTTTTTGTATATTGTAATCAGACAATGTGCGCCCATCTTCCAGTTGTTTGCCAGCAAAG 1232475 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| ||||| ||||| | |||| || || ||||| |||||| ||||||| Sbjct 1232474 ATCAAACGCTGCTGATCGGGAGGAATACCTTCTTTGTCTTGGATCTTTGCTTTTACATTT 1232415 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||||| || | || || ||||| || ||||| || ||||| Sbjct 1232414 TCAATTGTATCAGATGGTTCCACTTCTAAAGTGATTGTTTTGCCAGTCAATGTCTTTACG 1232355 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 1232354 AAGATTTGCAT 1232344 >seq327 Length=195883 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAG 9126 ||||||||||| |||||||||||| ||||||||| | || || || | |||| Sbjct 70500 GGATAAAAGATACGTTCACAAATTAGTTGAGCAATGCGATCACCACGTTTTATTTCAAAA 70441 Query 9127 TCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATC 9186 || | || ||||||||||| || || || || | || || | ||||| ||||| || Sbjct 70440 TCATTATCTGAATGATTGAAAAGAACAACACCTAAATTGCCACGATAATCTTCATCAATT 70381 Query 9187 ACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGA 9246 || || || ||||| || ||||| | ||| |||| ||||| || || || | ||| Sbjct 70380 ACCCCGGCTCCCACATCAATGAAATTCTTCCAAGCTAAACCAGAACGTGGTGCTACGCGA 70321 Query 9247 CCGTA 9251 || || Sbjct 70320 CCATA 70316 >seq1 Length=10097680 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| | || ||||| || |||||||||||||| | | | || | || ||| Sbjct 7547597 ACCAAATGCAATGTCGATTCTTTCTGTATATTGTAATCAGACAAAGTCCGCCCATCTTCC 7547538 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || || || || || |||| || || ||||| | |||| |||||| ||||| | Sbjct 7547537 AATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGA 7547478 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || ||| | | || || || | ||| || |||| ||||| ||||| Sbjct 7547477 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATTGTTTTG 7547418 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | |||||| || ||||| ||||| Sbjct 7547417 CCAGTAAGAGTTTTAACGAAAATTTGCAT 7547389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380929934940273