Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_019445.1 Length=44784 Score E Sequences producing significant alignments: (Bits) Value seq439 179 1e-40 seq724 111 5e-20 >seq439 Length=76666 Score = 179 bits (198), Expect = 1e-40 Identities = 335/492 (68%), Gaps = 0/492 (0%) Strand=Plus/Minus Query 190 TTGTGCTTACCGATACAAAATTAAAAAACCTCAAGCCGCAGGACAAACTGTACAAGGTCT 249 || ||||||| || |||||| ||| |||||| || || | |||||||| ||||| || Sbjct 76079 TTATGCTTACAGACACAAAACTAAGAAACCTAAAACCTCGCGACAAACTCTACAAAATCC 76020 Query 250 CCGATCGTGACGGGCTGTATGTAGCTGTGCTTACGTCAGGCACGGTCTCGTTTCGCTATG 309 ||||| | |||||||| || |||||||| || | || | | ||||| ||||||| Sbjct 76019 CCGATAGAGACGGGCTCTACGTAGCTGTTCTGCCAAGCGGTTCTGCATCGTTCCGCTATG 75960 Query 310 ACTACCGTATCAACGGTCGCCGCGAAACACTGGTAATCGGGCAGTATGGGCGTGACGGTA 369 ||||||| || | || | || ||||| || || || ||||| |||||||| Sbjct 75959 ACTACCGCATACATGGCAGGCGTGAAACTTTGACGATTGGTAGATATGGAGCTGACGGTA 75900 Query 370 TCAGCCTGGCAGAAGCGCGAGAAGAACTGATTGCTGCAAAGAAGCTGCTTAAAGCAGGCC 429 ||||| | || ||||| || |||||| | | | || || || | ||| | |||| | Sbjct 75899 TCAGCTTAGCCGAAGCCCGTGAAGAATTACATACCGCCAAAAAACAGCTAGAGTCAGGTC 75840 Query 430 AGTCACCGGCTGCGGCTAAACGTGACGGTATCAAAAAGATTCGTGGTGCCGAGACGTTTG 489 ||||||| ||||| | ||||| || ||||| || | | ||| || |||| Sbjct 75839 AGTCACCTGCTGCCGTAAAACGAGAAAATATCAGGCAGCTAAAGGCTGCAGATCGCTTTG 75780 Query 490 CGGTACATACCGACAGTTATATGAAACATGTCATCCTGGCTGACAGTACCCGCGCAATGA 549 || |||| | ||||||||| ||||| | ||||| || || ||||||| Sbjct 75779 AGGACTATACTTTCGCTTATATGAATCATGTGCGATTTGCTGAAAGCACAAAAGCAATGA 75720 Query 550 AGCAGGCGGTGATCGACCGTGACATACTTCCGGTTCTTGGCAACAAAATGATGACTGAAA 609 |||| ||||| ||||| ||||||||| | || || || || ||| | ||| |||| Sbjct 75719 AGCAAGCGGTTATCGATCGTGACATATTACCTACACTGGGTAAAAAACTTATGCACGAAA 75660 Query 610 TTACCACATCGATGGTTCGTGATTTGTGTGACCGGATTGTCGAACGCGGTGGTCGGGCAA 669 | || || | ||| | |||||| | || ||| || |||| ||||| | | | | | Sbjct 75659 TAACTACTACCATGTTACGTGATCTATGCGACAAAATACTCGAGCGCGGGGCTAGATCGA 75600 Query 670 CAGCAGTGCAGG 681 ||||| ||||| Sbjct 75599 CAGCAAGGCAGG 75588 Score = 134 bits (148), Expect = 4e-27 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 8427 GTTCGAGGGTATCAAGCTGCGGCTGGCTGACAACACGTTCTATACGCCCGATTTTGCTGT 8486 ||| || || |||||||||| |||| |||||||| ||||| ||||| ||||||| || Sbjct 60341 GTTTGAAGGAGTCAAGCTGCGTCTGGGCGACAACACATTCTACACGCCTGATTTTGTCGT 60282 Query 8487 GATGCTCGCCACCGGCGAGATGGAACTGCACGAAGTGAAAGGTTTCTGGACCGACGACGC 8546 |||| | | || |||||| |||||||| | ||||| ||||||||||| ||||| Sbjct 60281 GATGAACAGCGATGGAACTATGGAAATGCACGAAATTAAAGGGTTCTGGACCGATGACGC 60222 Query 8547 CAGGGTGAAAACCAAAGTCGCCGCAGATCAGTATCCGTTCCGAATCATCGGGGTAACGGT 8606 |||||| |||| ||||||||| || || ||| || ||| | | | | | | || Sbjct 60221 CAGGGTCAAAATCAAAGTCGCTGCTGACATGTACCCATTCAAATTTTTGGCCATCAAGGC 60162 Query 8607 TAAGCCAAAGAAAGCAGGTGGTGGCTGGAACATCGAAGAGTT 8648 | || || ||||| || || |||||| | ||||||||||| Sbjct 60161 TCAGAGCAAAAAAGCTGGCGGGGGCTGGCAAATCGAAGAGTT 60120 >seq724 Length=1463 Score = 111 bits (122), Expect = 5e-20 Identities = 169/230 (73%), Gaps = 8/230 (3%) Strand=Plus/Minus Query 34140 ATCACCACTACCGACGCCAATCGGTTGGTGGTGAACTGTGCAGGGTTGGCGTAACCGGCT 34199 |||||||| ||| | ||||| | |||||||| ||| | ||| | | ||||||| Sbjct 1345 ATCACCACCTTCGAGGTCAATCT-TGGGTGGTGAGCTGGATGAGTTTGACCTTACCGGCT 1287 Query 34200 AA-AAGGACCCGGCGCACCTTTCGGTGCCCCCACACAGCCCACCATAATACGAATGTGGC 34258 || |||||||||| | |||| ||| |||||| ||||||||||| || | || ||| Sbjct 1286 AACAAGGACCCGGTGAGCCTTGCGGCTCCCCCATCCAGCCCACCATTATTCTGATATGG- 1228 Query 34259 CGTGCTATACGCATaaaaaaaCCGCTTGCGCGGTG-AATGCGCCTT-TTAGTAATCCGGG 34316 || || |||||||||||| |||| || ||| ||||||||| ||||| ||||||| Sbjct 1227 CGGACT-GACGCATAAAAAACACGCTCTCGGCGTGTTATGCGCCTTGTTAGTTATCCGGG 1169 Query 34317 ACGCCAATCCCGGCACTGGATTTTTCCAGTGCCCGATT-ACTATGGCACA 34365 | | |||||||| ||| || ||| | ||| | |||| ||||| || || Sbjct 1168 AGGTCAATCCCGACACCTGAATTTGCAGGTG-CAGATTGACTATAGCGCA 1120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143184392725452