Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_019455.1 Length=37151 Score E Sequences producing significant alignments: (Bits) Value seq550 318 1e-82 >seq550 Length=29371 Score = 318 bits (352), Expect = 1e-82 Identities = 886/1335 (66%), Gaps = 27/1335 (2%) Strand=Plus/Minus Query 12766 AGGCGGTGGCTGAACGGCGTAAACAGGTATCCGACCCTGTAAATGGCT-TGGCATTTTTT 12824 |||| |||| | |||||| |||||| | ||||| || || |||| | || | |||| Sbjct 17585 AGGCCATGGCGGCGCGGCGTTCACAGGTGGCTGACCCGGTGAACGGCTATCGC-TATTTT 17527 Query 12825 ATTAATCATTATTTTCCGCACTATGTTCG-CTCCCCGTCTAAATCTCAACTACACCGTTA 12883 | | ||||||||||||||| | || | ||| | | | |||| || ||||| Sbjct 17526 GTGCAGACCTATTTTCCGCACTATATCCGTCATGCCGACCCCAGCG-AACTGCATCGTTA 17468 Query 12884 CCTTTTTGAGCGATTACCGAAAGTGTTTGCGAGTGAGAAATCTTGCCTTGAAGCGATTGC 12943 ||| ||| |||| | || | | || || |||| | || || ||||| Sbjct 17467 CCTGTTTCAGCGCCTGCCACGCATCGTCGCCAGCCCGAAAGGCGAGCAGGACGCCATTGC 17408 Query 12944 TGCTCCCCGTGGTGAAGCAAAATCAACGATAGTCACTCAGCTCTCTACACTTTGGTGTTT 13003 || || ||||| || || || |||||| | |||| ||||| | | || |||||| | Sbjct 17407 CGCGCCGCGTGGGGAGGCCAAGTCAACGCTGGTCAGCCAGCTGTTTGTGCTGTGGTGTCT 17348 Query 13004 GGTGACGCAGAAAAAA-CGCTACGCCCTATTAGTGATGGACTCTATCGACCAAGCCTATC 13062 |||| ||| | | || | ||| || || |||||||||| || |||||||| ||||| | Sbjct 17347 GGTG-CGCGGCATCAAGCACTATGCGCTGGTAGTGATGGATTCCATCGACCAGGCCTACC 17289 Query 13063 CTATGCTAGAAGCGATTAAATCAGAGCTGGAGTTTAATCAACGTTTACGCATTGATTTCC 13122 | ||||| ||||| || || | |||||||| ||||| | || | | ||| |||| Sbjct 17288 CGATGCTCGAAGCCATCAAGGCCGAGCTGGAATTTAACCCCCGGCTGCTGGCTGACTTCC 17229 Query 13123 CTGA-GATTGCAGGGGCTGGGCGTGTTTGGCAGTCGGGGACAATCATTACTCGGGCAA-- 13179 | || | ||| |||| || || || |||||| ||| || ||| | || || ||| Sbjct 17228 CCGAAGCCTGC-GGGGTAGGCCGCGTCTGGCAGATGGGCACCATCCTGACGCG--CAACG 17172 Query 13180 ATCAGAAAG-TCCAAGTGGCAGGCTCAGGCAAAAAATTGCGTGGTTTACGCCACGGGGCT 13238 || | ||| | || ||||| || || ||||| |||| || | ||||||||| | Sbjct 17171 ATATGCAAGGTGCAGGTGGCCGGTAGCGGTAAAAAGCTGCGCGGCCTGCGCCACGGGCCG 17112 Query 13239 TATCGTCCTGATTTGGTGATTTTGGACGATATTGAGAATGACGAACAAGTTCGCAACCCT 13298 || || ||||| ||||||| |||||||||||||||| ||||| || || |||||||| Sbjct 17111 TACCGCCCTGACCTGGTGATACTGGACGATATTGAGAACGACGAGCAGGTGCGCAACCCG 17052 Query 13299 GAACAGCGTGACAAATTGCATAATTGGCTCAAGAAAACTGTACTACCGTTAGGCTCTGCG 13358 || ||||| |||||| || | | ||||| | ||||| || || ||| | ||| |||| Sbjct 17051 GACCAGCGCGACAAACTGGAAAGCTGGCTGAGAAAAACCGTGCTGCCGCTGGGCGGTGCG 16992 Query 13359 GACGGTAAGTTAGATGTAATTTATATCGGTACGATTTTGCATTATGACAGCGTACTTA-G 13417 | || || | ||||| | |||||||| || || ||||||| ||| || |||| Sbjct 16991 GGCGCAAAACTCGATGTGGTCTATATCGGCACCATCCTGCATTACGAC-TCGGTCTTATC 16933 Query 13418 TCGCACTCTTGCCAGTAA---AGCGTGGAATACCGCCCATTTTAAAGCTGTTTTAAAAAT 13474 ||||| || | ||| | |||| || | |||| || | | Sbjct 16932 ACGCACCCT---GAATAACCCATTGTGGCGACAGGCACGGCTTAAGGCCCTGCGCCAGTG 16876 Query 13475 GCCTGACAATATGGTGCTTTGGGATAAATGGGAACA-CTTTTATCTAACCGAAGGAGAAG 13533 ||| | || || ||| ||||| | ||||| || | || ||| ||| || || | Sbjct 16875 GCCGGTGAACCTGTCGCTGTGGGAGACCTGGGAGCAGCGCTTGCGTAA-CGAGGGGGAGG 16817 Query 13534 -CG-GTCGCAGATGCGTTTTATTTTGCAAATCAAGCGGAAATGGATAAAGGGGCGGTAGT 13591 || | ||||| || ||||| | | | ||||||||| | || |||| || Sbjct 16816 ACGCGGCGCAG--GCATTTTACACCCGGCACCGCGTGGAAATGGAAGATGGCGCGGAGGT 16759 Query 13592 GTCGTGGGAAGCTCGTCCTATTCTGGCGTTAATGAAAATTCGAGCAAGGGACGGACACGC 13651 || ||| || || || | ||| | | ||| | || || || | ||||| ||||| Sbjct 16758 CTCCTGGTCCGCCCGCCCGCTGCTGACCCTGATGCATATCCGCGCCCGTGACGGTCACGC 16699 Query 13652 TACTTTTGACTCGGAATATCAAAACGACCCTGTAAGCGGTGATGATGCGATTTTTGCGAA 13711 || ||||| | || || || || ||||| || |||||||| |||||| | ||||| | Sbjct 16698 CACCTTTGATGCCGAGTACCAGAATGACCCGGTCAGCGGTGAAGATGCGCTGTTTGCCCA 16639 Query 13712 TAGCTTGCAATACTGGACGGAGTTGCCTGATGACTTGATTTATTTTGGGGCGTTAGACCC 13771 || |||| | |||| | || | | || | | | | | |||||| | ||||| Sbjct 16638 CTGCCTGCATTTCTGGGTCAACCGGCTTAACGAGTGGGTCTTCTATGGGGCCTGCGACCC 16579 Query 13772 ATCTATGGGGAAAGCGGGGGCAAGCCGTGACCCGTCGGCGATTTTGGTCGGTGGCTATCA 13831 | || || || ||||| |||||||||||||| ||| | |||||||||||| | | Sbjct 16578 CAGCCTCGGCAAGGCCGGGGCCAGCCGTGACCCGTCAGCGCTGCTGGTCGGTGGCTTTAA 16519 Query 13832 CCGTGCAAGCGGTAAGTTATATGTGGTAGAAGCGCAGATTAAGAAGCGTTTGCCTGATTT 13891 || || | ||| | | ||||||| ||||||||||| ||||| |||| || Sbjct 16518 TCGCGCCACCGGCGTGCTGGATGTGGTGGAAGCGCAGATACGCAAGCGGCTGCCGGACGC 16459 Query 13892 GATTATCGAAGATGTGATTAGGCTACATACACAATACCAGTGCCATAAATGGTTTGTAGA 13951 |||||| || | ||| || || | |||| || |||| ||| | || Sbjct 16458 CATTATCAGCAATATTATTGCTCTGCAAAAGGAATATCACTGCCTGGTCTGGGGCATTGA 16399 Query 13952 AACGGTGCAGTTTCAGGAGTTTTTGCAGACGGAGCTGGTTAAACGCTCGGCACAACGTGG 14011 ||||||||||||||||||| ||| || |||||| |||| ||| |||| || | || Sbjct 16398 GGCGGTGCAGTTTCAGGAGTTCCTGCGCACCGAGCTGATTAAGCGCGCGGCTCAGCTGGG 16339 Query 14012 CAAGCCTGTGCCAGCAATGGCAGTTAAACCTAACACCGACAAGATGTTGCGGATTGAGAG 14071 | | || ||||| || ||| ||| || | |||||||| ||||||| || |||| Sbjct 16338 CCACCCGGTGCCGGCGCGGGCCATTATCCCCCATGCCGACAAGCTGTTGCGTATCGAGAC 16279 Query 14072 CTTGCAACCGCATAT 14086 | |||| || ||||| Sbjct 16278 CCTGCAGCCCCATAT 16264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118759271604606