Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_019501.1 Length=39646 Score E Sequences producing significant alignments: (Bits) Value seq556 441 2e-119 seq439 230 6e-56 >seq556 Length=23517 Score = 441 bits (488), Expect = 2e-119 Identities = 982/1445 (68%), Gaps = 44/1445 (3%) Strand=Plus/Minus Query 26452 AATGCCGATTCAGCAACTTCCGCTTATGAAAGGTGTCGGCAAAGACTTTCGAA-ACGCTG 26510 |||| |||| |||| | || || || |||||| |||| |||| | ||| |||| | Sbjct 8531 AATGGCGATAATGCAATTACCCCTGATAAAAGGTCTCGGTAAAG-CGCGCGATGACGCCG 8473 Query 26511 ACTATATCGACTATCTGCCAGTGAATATGTTGGCTACACCAAAAGAAATCCTTAACAGCA 26570 | ||||||||| |||| || |||||| ||||||| || || | | || || Sbjct 8472 ATTATATCGACGCCTTGCCGGTCAATATGCTGGCTACGCCCAAGCCGGTATTGAATGCCA 8413 Query 26571 GCGGATATCTTCGCTCATTCCCGGGCATTGCCA--AACGTTCTGATGTGAACGGCGTATC 26628 |||| ||||| ||||| || || || |||||| || | | || || ||| || || Sbjct 8412 GCGGTTATCTACGCTCGTTTCCCGGTATTGCCCGCAAAG--CAGAGGTCGCCGGGGTGTC 8355 Query 26629 GCGCGGCGTCGATTACAA----CATGGCGCAGAATGCTGTTTATCGTGTG-TGTGGTGGC 26683 || ||||| | ||||| |||| | || | |||||||| | | || | | Sbjct 8354 CCGAGGCGTTCAGTACAATACCCATG----AAAAGACGGTTTATCGCGGGCTGGGAAATC 8299 Query 26684 AAGCTGTACAAAGG--AGAAAGTGAAGTCGGTGACGTCGCCGGAAGTGGTCGCGTATCA- 26740 || | |||||||| | ||| || ||| | | || |||| |||||| |||| Sbjct 8298 AAT-TATACAAAGGCCATAAACCGATAGCGGATA--TTGCTGGAAAGGGTCGC--ATCAG 8244 Query 26741 -ATGGCGCATGGGCGGACATCA--CAGGCGGTAG--GCGTTAATGGTCAACTGGTCGAAC 26795 |||||| | | || || || |||||||||| ||| | || || || || | Sbjct 8243 CATGGCGTTTAGCCG--CAACAGTCAGGCGGTAGCAGCGGCA--GGAAAAATGA-CGCTC 8189 Query 26796 -ACCGCTATGATGGCACGGTTAAAACCGTCTCAAACTGGCCTACGGACAGCGGATTCACG 26854 |||| || ||||||||||| ||||| | ||||||||| | |||| || |||| Sbjct 8188 TACCGTTACGATGGCACGGTAAAAACACTGGAAAACTGGCCGAAAGACAAAAAATACACG 8129 Query 26855 CAGTATGAGTTAGGTTCTGTTCGTGACATTACGCGCTTACGTGGGCGTTATGCGTGGTCA 26914 || || || | ||| | || || || || | || || || ||||||| |||| Sbjct 8128 CAATACGATATTGGTACCGTGCGGGATATGTGCCATTTGCGCGGACGTTATGTCTGGTGT 8069 Query 26915 AAAGACGGTACTGATTCATGGTT--TATCACTGACCTTGAAGACGAATCACATCCTGACC 26972 |||||||| || ||| || || | |||| || | ||||| ||||| || ||||||| Sbjct 8068 AAAGACGGCACCGAT--ATTTTTGGTGTCACCGATTTGGAAGATGAATCTCACCCTGACC 8011 Query 26973 GATACAGCGCACAATATCGTGCCGAGTCGCAGCCTGACGGCATCATCGGAATCGGAACAT 27032 | ||| |||| | ||||| ||||| || || || |||||||| ||||| || | | | Sbjct 8010 GCTACCGCGCGCTGTATCGCGCCGAATCACAACCCGACGGCATTATCGGTATTGATAGCT 7951 Query 27033 GGCGAGACTTCATCGTCTGCTTTGGTTCATCGACGATTGAGTATTTTTCCCTGACTGGCG 27092 |||| || || || ||||||||||| | || || ||||| |||||||||||||| || | Sbjct 7950 GGCGCGATTTTATTGTCTGCTTTGGCGCGTCCACCATTGAATATTTTTCCCTGACCGGGG 7891 Query 27093 CAACCACCGTTGGTGCCGCTTTGTATGTCGCACAGCCATCACTGATGGTGCAAAAAGGCA 27152 | || || |||| | |||| ||||||||| |||| ||||| | ||||||| Sbjct 7890 CGGCCGACGGGCAATCCGCCATCTATGCCGCACAGCCTGCACTCATGGTCGAGAAAGGCA 7831 Query 27153 TCGCCGGGACTTACTGCAAAACGCCATTCGCTGATTCTTATGCGTTCATCAGCAATCCGG 27212 | |||||||| ||||||| || | ||| ||| || ||| | |||||||| ||| || Sbjct 7830 TTGCCGGGACCCACTGCAAGACCCGGCTCGGCGATGCTCATGTGATCATCAGCCATCAGG 7771 Query 27213 CAACAGGTGCTCCGTCTGTATACATCATCGGATCCGG-TCAGGTTTCACCAATCGCCAGC 27271 | || || || ||||| |||||| | || ||| || |||| || | || |||| Sbjct 7770 CCACCGGCGCGCCGTCGGTATACCTGAT-TAATCAGGCGCAGGCGACATCGATTGCCACG 7712 Query 27272 GCGAGCATTGAGAAAATCCTCCGCTCCTACACTGCTGATGAACTGGCTGATGGTGTGATG 27331 || | ||| |||||||| || ||| |||||| ||||||||||| | || ||| Sbjct 7711 GCCACCATCGAGAAAATTCTACGCAGCTACACACACGATGAACTGGCGAGCGCCGTCATG 7652 Query 27332 GAATCGCTGAGATTTGATGCTCATGAGTTGCTGATTATCCACCTTCCGCGCCATGTTCTC 27391 ||| | | | || || || || || || ||||||| | ||||| || | | | Sbjct 7651 GAAACCGTCCGTTTCGACAGCCACGAATTAGTGCTTATCCATTTGCCGCGACA-GGTGTT 7593 Query 27392 GTG-TACGACGCATCTTCAAGCGCCAATGGTCCGCAATGGTGTGTGTTGAAAACTGGCTT 27450 ||| || ||||| | | | | || || ||||||||| | || ||||||| ||||| Sbjct 7592 GTGTTATGACGCCGCGGCCAACCAGAACGGGCCGCAATGGAGCCTGCTGAAAACGGGCTT 7533 Query 27451 GTATGACGATGTGTACCGCGCTATCGACTTCATTTACGAAGGCAATCAGATAACGTGCGG 27510 ||| ||| | || |||| ||||| || || | | | | |||| | || || || Sbjct 7532 TTATCACGCTCCCTATCGCGGCATCGATTTTATGTTTGCCGACCATCACCTCACCTGTGG 7473 Query 27511 AGATAAGCTGGAATCGGTTACCGGCAAATTGCAGTTCGATATCAGCAGC-CAGTACGACA 27569 ||||| | || | | |||| || | | || | ||| | || || || || | Sbjct 7472 CGATAAACACGATGCCCTCCTCGGCCAACTTGATTTTG-CATCTTCTGCGCAATATGAAA 7414 Query 27570 AGCAGCAGGAACACCTGCTGTTTACTCCGTTGTTCAAAGCGGATAACGCCAGAGTTTTCG 27629 | | |||||| || | || | ||| ||| | ||||| || ||||| ||| | || || | Sbjct 7413 AACCGCAGGAGCATGTTCTCTATACCCCGCTTTTCAAGGCAGATAATGCCCGCGTATTTG 7354 Query 27630 ACCTTGAGGTTGAATCGTCAACTGGCGTTGCGCAGTACGCCGACCGCCTGTTCCTCTCTG 27689 | |||| | || | ||||| ||||| ||||| |||||||||||| |||||||| | Sbjct 7353 ATTTTGAACTGGAGGCATCAACCGGCGTGGCGCACATCGCCGACCGCCTCTTCCTCTCCG 7294 Query 27690 CAACCACTGACGGCATAAATTACGGTCGTGAGCAGATGATTGAGCAGAATGAACCGTTCG 27749 | ||| | |||||||| ||| || || || ||||||||| | || |||| ||||| | Sbjct 7293 CCACCGCCGACGGCATGCATTTTGGCCGCGAACAGATGATTAACCAAAATGCGCCGTTTG 7234 Query 27750 TTTACGACAAGCGTGTTTTGTGGAAGCGAGTCGGGCGCATCAGGAAAAATGTCGGCTTCA 27809 || ||| |||| || | ||| ||| || || |||||| |||||||||||||| | Sbjct 7233 CGTATGACCAGCGAATTCTCTGGCGGCGGGTTGGCTACATCAGAAAAAATGTCGGCTTTA 7174 Query 27810 AATTGCGAGTTATCACGAAGTCACCTGTCACTCTGTCAGGCTGCCAGATAAGGATTGAGT 27869 || | || || ||||| || || || || || || || || ||||||||||| || | Sbjct 7173 AAGTACGGGTGATCACCTCATCGCCCGTGACGCTCTCCGGTTGTCAGATAAGGATGGAAT 7114 Query 27870 AATGG 27874 ||||| Sbjct 7113 AATGG 7109 Score = 149 bits (164), Expect = 2e-31 Identities = 235/334 (70%), Gaps = 2/334 (1%) Strand=Plus/Minus Query 33928 AATGTCAGATATCACCGCAAATGTTGTGGTAAGCATGCCTTCGCAACTATTCACTATGGC 33987 |||| | ||||| || |||| |||| ||| |||||| || ||| | || || | Sbjct 2461 AATGGCTGATATTACGCCAAACATTGTCGTATCCATGCCGTCACAAATTTTTACCCAGCG 2402 Query 33988 GCGTTCTTTTAAAGCC-GTAGCCAATGGAAAAATTTATATCGGTAAAATTGACACTGACC 34046 || ||||| || ||||| || || |||||||| ||||| ||||| ||||| |||| Sbjct 2401 CCGGGAATTTAAGTCCTGTAGC-AACGGCAAAATTTACATCGGCAAAATCGACACCGACC 2343 Query 34047 CGGTAAATCCTGAAAACCAGATTCAGGTTTATGTGGAAAACGAAGACGGTTCTCACGTTC 34106 | || ||||||| || || | |||||| ||||||| |||||||| | | Sbjct 2342 CCACAATAGCTGAAAATCAAATACCCGTTTATCTGGAAAATGAAGACGGAAAATATACCC 2283 Query 34107 CTGTTGCACAGCCAATCATCATTAACGCTGCTGGTTACCCTGTATATAATGGACAGATTG 34166 || | ||||| | ||||| | | | ||| ||||| || || || || ||||||| Sbjct 2282 GAGTCGGCCAGCCGCTTATCATCGGCACGGGTGGCTACCCGGTCTACAACGGGCAGATTG 2223 Query 34167 CCAAATTCGTAACTGTGCAAGGCCATTCGATGGCTGTATACGATGCGTATGGTGTGCAGC 34226 |||||||||| || | |||||||| | ||||| || || || | | || || |||| Sbjct 2222 CCAAATTCGTGACAGAAGAAGGCCATGCTATGGCAGTGTATGACGGCGACGGGGTACAGC 2163 Query 34227 AGTTTTATTACCCGAATGTGCTGAAGTATGACCC 34260 ||||||||| ||| || |||||||| ||||| || Sbjct 2162 AGTTTTATTTCCCCAACGTGCTGAAATATGAGCC 2129 >seq439 Length=76666 Score = 230 bits (254), Expect = 6e-56 Identities = 667/1019 (65%), Gaps = 42/1019 (4%) Strand=Plus/Minus Query 10442 GTTGGCGGTTTTGCTTATATCGCTGAGATCGCAAAGAACACGCCAAGCGCAGCAAACATC 10501 ||||| || ||||| || | || |||| ||| ||| ||||| || ||||| Sbjct 62021 GTTGGTGGATTTGCCTACCTGATGGAAATCGTCAAGTTCACCCCAAGTAGTGCCAACATG 61962 Query 10502 GTTGCCTATGCAATGCA-GGTTCGTGAAACCGCAATGGAACGCTACGCCATCA--ACCGC 10558 || || ||||| ||| ||||||||| |||| ||||| ||||||| ||| || || Sbjct 61961 GTCGCTTATGCC-TGCGTGGTTCGTGATTCCGCCATGGAGCGCTACGGGATCGCTACAGC 61903 Query 10559 ATGACTGAAGCGACGGAATTGCTCTATTCCCGCAACGGAATGACTGCAACGCAGAAGTAC 10618 | | || || | ||| | ||| |||||||||| |||| ||| | |||| Sbjct 61902 AAACCAGATA--ACCGCGTTGTTGTATGCCCGCAACGGTATGAGCACAAGAGAAAAGTTT 61845 Query 10619 GAAGCTATTCAGGCAATTTTCACGCAACTGACAGACCATGCAAAAACCGGATCGCGTCGC 10678 ||| | || || | | || | || | || || || | ||||| || |||||| Sbjct 61844 GAATCAATCCAAACGTTGTTTAGCGAAATTACCGATCACGTCAAAACGGGTAAGCGTCGA 61785 Query 10679 GGCCTTCGCTCATTTGGTGAGGTCATGGAAGACTGGGTTAGCGACCTTGAGAAGCGTTT- 10737 || | || | || || || |||| || ||| || ||| | || ||||||| Sbjct 61784 GGTGCGAGGCCACTAGGGGACGTGATGGCTGATTGGCTTGACGAAGTAGATCAGCGTTTC 61725 Query 10738 --TGACCCGTCAGGCGAACAACGAGGAATGAGCACAGGGATCCCATCGCTGGACAGGATG 10795 ||| | | || || | ||||||| || || |||||||| ||||| || | Sbjct 61724 AGTGATACTACT--CGGACTA-GAGGAATTAGAACGGGGATCCCGTCGCTAGATGAACTT 61668 Query 10796 CTGTCACCGAAAGGTCTGGTGAAAGGCTCTCTGTTTGTCATTGGCGCTCGCCCTAAGATG 10855 || ||| || || ||||| || || ||| | ||||| || ||||| || || ||| Sbjct 61667 CTCCAACCCAAGGGACTGGTTCGTGGTTCGCTGATGGTCATCGGTGCTCGTCCCAAAATG 61608 Query 10856 GGGAAAACGACGCTATACAGCCAGATGGCAATCAACTGCGCAGTGCATGAGAAAAAGCCT 10915 || || || ||| | ||| || |||| | || ||||| |||| || || |||| Sbjct 61607 GGCAAGACAACGTTGTACTCACAATTGGCTCTTAATTGCGCCTTGCACGAAAATTTGCCT 61548 Query 10916 GCTCTGATGTTCAGCCTTGAAATGCCAGGTGATCAGATACTGGAAAAACTGGTAGGGCAG 10975 || | ||||||||||||| ||||||| | || ||| | || || | || ||| Sbjct 61547 GCCGTACTGTTCAGCCTTGAGATGCCAGACAAGCAAATATTCGAGCGCATGATCGGCCAG 61488 Query 10976 AAGTCTGGTGTTAACCCGAATATTTTTTACCTTCCGGCGACAAATGACGCCGATGACGGC 11035 || || | || | ||||||||||| | ||| | |||| |||| || Sbjct 61487 TCATCAGGAATCAATACTGATATTTTTTACTGT--GGC----ACTGACAACGATAGCGAT 61434 Query 11036 TATCAGGGTGATTACGATGGTGACTTCAACAGGGCGATCGAAACAGCAAATCGCTTGAGT 11095 | || | | || | ||| | | || | |||| || | Sbjct 61433 T-TC--GCTTATGCCAATGCTAAA---------GCATTGGAAA------------TGGTT 61398 Query 11096 GAAATCGACCTGCTTTACATCGACGACACGCCGGGATTATCTCTGGCTCAAATCGTCAGC 11155 ||| || | |||| | | || ||||| |||||| ||| || ||| || Sbjct 61397 GAATCCGGCAATCTTTTCGTTGATGACACACCGGGAGCCAGTCTAAGCCATATCATCGCA 61338 Query 11156 GAAAGCCGTCGAATCAAACGAGAAAAAGGATGCGTTGGCATGATTCTGGTCGATTACCTG 11215 ||||||||| | || || || || || || || ||| | ||||||||||||||| Sbjct 61337 GAAAGCCGTAGGATTAAGCGTCAATGCGGTAAGGTAGGTATGGTGCTGGTCGATTACCTG 61278 Query 11216 ACACTAATGACCGCTGAGAAGGCCGATCGCAACGACCTTGCTTACGGCATGATCACCAAA 11275 || || ||| || ||||| ||||| ||||||||| | || ||||| || || ||||| Sbjct 61277 ACGCTTATGCGGGCAGAGAAAGCCGACCGCAACGACTTGGCGTACGGGATTATAACCAAG 61218 Query 11276 GGACTGAAGAACCTTGCCAAAGAGCTTGATTGCGTTGTTGTGCTTCTTACACAACTTAAC 11335 ||||| |||||||||||||| |||||||||||| |||| ||||| || ||||| | ||| Sbjct 61217 GGACTCAAGAACCTTGCCAAGGAGCTTGATTGCATTGTGGTGCTGCTAACACAGTTAAAC 61158 Query 11336 CGCGCACTGGAAAGCCGAACCAATAAACGCCCATTACCAAGTGACTCACGAGATACAGGG 11395 |||| || || | || || |||||||| ||||||||| ||||||| || Sbjct 61157 CGCGACCTTGAGAAACGTGTTAACAAACGCCCCCAGCCAAGTGACAGCAGAGATACTGGC 61098 Query 11396 CAGATTGAACAGGATTGCGATTATTGGGTGGGGATCCATCGTGAAGGTGCTTTTGATGA 11454 ||||||||||| || || ||||| ||| |||||||| | || |||||||||| ||| || Sbjct 61097 CAGATTGAACAAGACTGTGATTACTGGCTGGGGATCTACCGGGAAGGTGCTTATGACGA 61039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126743115073296